Cla97C11G216252 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G216252
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr11: 16241015 .. 16242175 (+)
RNA-Seq ExpressionCla97C11G216252
SyntenyCla97C11G216252
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATCGGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCTTCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTATGCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAACTGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATGGAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGTACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA

mRNA sequence

ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATCGGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCTTCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTATGCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAACTGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATGGAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGTACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA

Coding sequence (CDS)

ATGGAGTTAATGGAGGACGCAATCCGGGTATTGGCGAAGCCAGGGGCCAAGTGGGATGTTTCACCCACAAGTATAAAAACGCTATCAGCTAGCAGCCTAAGACCAGAGGCAAACCTGTGGGTGTACTTGGTGAAGAAGCGACAGATCCCTACAACGCATGACAAGACAGTGTCAAGGGATCGGGTAATGGCAGCATATTGCATTATGCGTCGCATCACCCTTGATGTTGGACGCATAATTGCGGCGCAGATAAGAGGGGTGTTCAACAAGCCAAGGGGTCAACTCTTTTTCCCCACTCTTATCATGAACTTATACGCCAATGCTTCCATCGGAGGCCCAACGGAAGTGTTAGACGCAGAGAAGATGATTGAAGTTAGTGGCGTAATCGCCCACAAGACTCTGCGTTGGTTGATGAGAGGATCACAACATCTGCCAGAGCCTGCCAAGGCCACCAAAAGACCTCATCAACCCATTCTGCCTCCAAAGCCGCAACCGCAGAAGAAGGGGAAGCCGTCCAAGTTGAAGGCCGTGGCAAATCCTGATGCCACCATTAGACCTTCCCCAACCTCAAGCCCTTCACCACCACTTCCAACAACCAGAAGGGAACCAACTCCAACTCCACCTCCTCCTAAGACGCATCGCCCTAAGCCACCTCCACCTTCTCATAAAACGCATCGCCCCAAACATCCAAAACCTCGACCTTCCACAAAACCCTCCGCCCCAATACGAGTTGATGACTCACACTTTGGGGATCTTGGCGCGACTGTTATGCGTCCATTATCCCCTGCATTTGACGAAACTCCATCCACTCCCCCACCTCAACCAAACCCGTCTACTCCACCTCAGCCAAACTCGCCTACCCCACCAACGCAACCACAACTGCAAGAAGGCCAACTTGACCTCGAGTGGGAGACAGTGCAAACGTATCTGCAGCAATCGATCTTGCGTCCTGTGATGCACTCATTAAATATGTTAGCACACAGGCAGATGGAGCAGTTCCAATTCACATTAAATTACGTTCATCAAATGCTCTCTATCCGACCGGAAATCCCGCCCCCTGATATTCCAGAACGCCTCCAACAGCCCCTTGTCTTTCCAGTACCGCAGCGCCCTGCACCTGAGCAGCAACGCAGACCTAATGAAGACGAGACTGATGGTTAA

Protein sequence

MELMEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVMAAYCIMRRITLDVGRIIAAQIRGVFNKPRGQLFFPTLIMNLYANASIGGPTEVLDAEKMIEVSGVIAHKTLRWLMRGSQHLPEPAKATKRPHQPILPPKPQPQKKGKPSKLKAVANPDATIRPSPTSSPSPPLPTTRREPTPTPPPPKTHRPKPPPPSHKTHRPKHPKPRPSTKPSAPIRVDDSHFGDLGATVMRPLSPAFDETPSTPPPQPNPSTPPQPNSPTPPTQPQLQEGQLDLEWETVQTYLQQSILRPVMHSLNMLAHRQMEQFQFTLNYVHQMLSIRPEIPPPDIPERLQQPLVFPVPQRPAPEQQRRPNEDETDG
Homology
[Close]
BLAST of Cla97C11G216252 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-20
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 0 

Query: 2   ELMEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDR 61
           E MEDA+R L + G +W VS   IKTL++S L PEA LWVYLVK+R IPT+HDKTVSRDR
Sbjct: 269 EKMEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRDR 328

Query: 62  VMAAYCIMRRITLDVGRIIAAQIRGVFNKPRGQ 95
           VMAAYCI   I +DV  +IAAQ +    + + Q
Sbjct: 329 VMAAYCIACGILIDVSHLIAAQAKEAAQRKQRQ 361

[Close]
BLAST of Cla97C11G216252 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-19
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 4   MEDAIRVLAKPGAKWDVSPTSIKTLSASSLRPEANLWVYLVKKRQIPTTHDKTVSRDRVM 63
           MEDA++VL + G KW VS   + TL++ SL  E  LWVYLVKKR I TTHDKTVSRDRVM
Sbjct: 332 MEDALQVLMQLGMKWSVSLKGVSTLASKSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVM 391

Query: 64  AAYCIMRRITLDVGRIIAAQIRGV 88
           A YCI+R I +DVG++IA Q+R +
Sbjct: 392 ATYCIVRSIPIDVGQLIARQLRAL 415

The following BLAST results are available for this feature:
BLAST of Cla97C11G216252 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904385.12.4e-2059.14uncharacterized protein LOC120090747 [Benincasa hispida][more]
XP_038876674.13.5e-1961.90chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
BLAST of Cla97C11G216252 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G216252 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G216252 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 223..239
score: 41.18
coord: 149..165
score: 35.29
coord: 199..220
score: 35.45
coord: 183..195
score: 46.15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..290

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G216252.1Cla97C11G216252.1mRNA