Cla97C01G000080.2 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C01G000080.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	60S acidic ribosomal protein P1
Location	Cla97Chr01: 53475 .. 54023 (-)
Sequence length	279
RNA-Seq Expression	Cla97C01G000080.2
Synteny	Cla97C01G000080.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCATTCTTTCTGCTCTGCTGCTCTGCAATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGTACCTATCAATTTTCCTTTTTACCTCCTTCCATTTCTAACAGCTCTCTTCTTCTTTCTTTCCATATTTTAATTTAGGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGACAAGCAGGTACGCGGTTTTTTCGTACTTGCCTAAATAACAAATAATTCAAAATTAGGATTATATAAGTTTATACATGATTTTAGATCGCTGAAAGCAATTGAGCCTATAGCTCCTTCTTACTGGAGCATATATATTATTGATTTTGATTTACGTATATTCCTGGTTATATATGGTTGTATTGTACCTGTATCATATGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA

mRNA sequence

ATGTTCTCATTCTTTCTGCTCTGCTGCTCTGCAATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGACAAGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA

Coding sequence (CDS)

ATGTTCTCATTCTTTCTGCTCTGCTGCTCTGCAATGTCTACCAGTGAACTTGCTTGCACCTACGCCGCCTTGATTCTTCATGGCGACGCCATCTCCGTCGCTGCCGAGAAGATTTCCAAGTCGGTGAACGCTGCCAGCCTTACCGTCGAATCCTACTGGCCTTCTCTCTTTTCTCTCTCCATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGACAAGCAGGAAGAGGTGATGGAAGAGAGCGAGGATGAGATGGTCTTGGGCTTTGTTTGA

Protein sequence

MFSFFLLCCSAMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISSSAGNAAPAPVDKQEEVMEESEDEMVLGFV

Homology

[Close]

BLAST of Cla97C01G000080.2 vs. NCBI nr
Match: XP_022138164.1 (60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 12  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------L 71
           MSTSELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L
Sbjct: 1   MSTSELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLIL 60

Query: 72  SISSSAGNA------------------APAPVDKQEEVMEESEDEMVLG 91
           ++ S+A +A                  APAPV+K+EE +EESED++V G
Sbjct: 61  NVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFG 109

[Close]

BLAST of Cla97C01G000080.2 vs. NCBI nr
Match: XP_022138163.1 (60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 54/105 (51.43%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 16  ELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISS 75
           ELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L++ S
Sbjct: 33  ELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS 92

Query: 76  SAGNA------------------APAPVDKQEEVMEESEDEMVLG 91
           +A +A                  APAPV+K+EE +EESED++V G
Sbjct: 93  AAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFG 137

[Close]

BLAST of Cla97C01G000080.2 vs. NCBI nr
Match: XP_006394706.1 (60S acidic ribosomal protein P1 [Eutrema salsugineum] >ESQ31992.1 hypothetical protein EUTSA_v10005602mg [Eutrema salsugineum])

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 11  AMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------ 70
           A +TSELACTYAALILH D I + AEKISK V AA++ VESYWPSLF+            
Sbjct: 2   ATTTSELACTYAALILHDDGIEITAEKISKLVKAANVNVESYWPSLFAKLCQKKNIDDLI 61

Query: 71  LSISSSAGNAAPAPVD-----------------KQEEVMEESEDEMVLG 91
           +++ +S G AAP   +                 K+E+V EESED+MV G
Sbjct: 62  MNVGASGGAAAPVATNDVPAATQAVPAAEDIKKKKEDVKEESEDDMVFG 110

[Close]

BLAST of Cla97C01G000080.2 vs. NCBI nr
Match: XP_009111636.1 (60S acidic ribosomal protein P1 isoform X2 [Brassica rapa])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LS 72
           +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            ++
Sbjct: 3   NTSELACTYAALILHDDGIEITAEKIAKLVKAANVNVESYWPSLFAKLCQKKNIDDLIMN 62

Query: 73  ISSSAGNAAPAPVD----------------KQEEVMEESEDEMVLG 91
           + +S   AAP  ++                K+EEV EESED+MV G
Sbjct: 63  VGASGDAAAPVAINVPAAAQAVPSAEETKKKKEEVKEESEDDMVFG 108

[Close]

BLAST of Cla97C01G000080.2 vs. NCBI nr
Match: XP_013659163.1 (60S acidic ribosomal protein P1 isoform X2 [Brassica napus])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 13  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LS 72
           +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            ++
Sbjct: 3   NTSELACTYAALILHDDGIEITAEKIAKLVKAANVNVESYWPSLFAKLCQKKNIDDLIMN 62

Query: 73  ISSSAGNAAPAPVD----------------KQEEVMEESEDEMVLG 91
           + +S   AAP   +                K+EEV EESED+MV G
Sbjct: 63  VGASGDAAAPVATNVPAAAQAVPSAEETKKKKEEVKEESEDDMVFG 108

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 12  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------L 71
           M++ ELAC YAALIL  D I++ AEKI+  V AA++ VESYWP+LF+            L
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 72  SISSSAG---------------NAAPAPVDKQEEVMEESEDEM 88
           S+ S  G                AAPA  +K+EE  EES+D+M
Sbjct: 61  SVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDM 103

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy Swiss-Prot
Match: P27464 (60S acidic ribosomal protein P1 OS=Polyorchis penicillatus OX=6091 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.2e-10
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 13 STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS--------- 72
          STSELAC Y+ALILH DAI+  AEK++K ++AA++ VE YWP LF+L   +         
Sbjct: 5  STSELACVYSALILHDDAIT--AEKMNKIISAANVNVEPYWPGLFALEGKNIGDLICNVG 64

Query: 73 SAGNAAPAPV---------DKQEEVMEESEDE 87
          S+G AA AP          +K+EE   ESEDE
Sbjct: 65 SSGPAAGAPAAGAAGGAVEEKKEEKKAESEDE 94

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 40/99 (40.40%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 12 MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS-----------LS 71
          MSTSELACTYAALILH D + + A+ I+    AA + VE YWP+LF+           ++
Sbjct: 1  MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 72 ISSSAGNAAPA-------------PVDKQEEVMEESEDE 87
             + G AAPA                K+EE  E SE+E
Sbjct: 61 NVGAGGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEE 99

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy Swiss-Prot
Match: P18660 (60S acidic ribosomal protein P1 OS=Gallus gallus OX=9031 GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-08
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 13  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSISS--------- 72
           S SELAC Y+ALILH D ++V  +KI+  + AA + VE +WP LF+ ++++         
Sbjct: 3   SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICN 62

Query: 73  -------------------SAGNAAPAPVDKQEEVMEESED 86
                              + G AAPA   K+EE  EESE+
Sbjct: 63  VGAGGGAPAAAAPAGGAAPAGGGAAPAEEKKEEEKKEESEE 103

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy Swiss-Prot
Match: P47955 (60S acidic ribosomal protein P1 OS=Mus musculus OX=10090 GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 13  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFSLSI----------- 72
           S SELAC Y+ALILH D ++V  +KI+  + AA ++VE +WP LF+ ++           
Sbjct: 3   SVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICN 62

Query: 73  -----------SSSAGNAAPA---------PVDKQEEVMEESEDEMVLG 91
                      ++ AG AAP+          V+ ++E  EESED+M  G
Sbjct: 63  VGAGGPAPAAGAAPAGGAAPSTAAAPAEEKKVEAKKEESEESEDDMGFG 111

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy TrEMBL
Match: A0A6J1C9A3 (60S acidic ribosomal protein P1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.9e-16
Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 12  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------L 71
           MSTSELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L
Sbjct: 1   MSTSELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLIL 60

Query: 72  SISSSAGNA------------------APAPVDKQEEVMEESEDEMVLG 91
           ++ S+A +A                  APAPV+K+EE +EESED++V G
Sbjct: 61  NVGSAAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFG 109

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy TrEMBL
Match: A0A6J1CC92 (60S acidic ribosomal protein P1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.4e-14
Identity = 54/105 (51.43%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 16  ELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LSISS 75
           ELACTYAALILH DAISV AEKI+  V AA LTVESYWPSLF+            L++ S
Sbjct: 33  ELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS 92

Query: 76  SAGNA------------------APAPVDKQEEVMEESEDEMVLG 91
           +A +A                  APAPV+K+EE +EESED++V G
Sbjct: 93  AAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFG 137

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy TrEMBL
Match: V4KQ04 (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005602mg PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 11  AMSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------ 70
           A +TSELACTYAALILH D I + AEKISK V AA++ VESYWPSLF+            
Sbjct: 2   ATTTSELACTYAALILHDDGIEITAEKISKLVKAANVNVESYWPSLFAKLCQKKNIDDLI 61

Query: 71  LSISSSAGNAAPAPVD-----------------KQEEVMEESEDEMVLG 91
           +++ +S G AAP   +                 K+E+V EESED+MV G
Sbjct: 62  MNVGASGGAAAPVATNDVPAATQAVPAAEDIKKKKEDVKEESEDDMVFG 110

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy TrEMBL
Match: M4F610 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.9e-12
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 13  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LS 72
           +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            ++
Sbjct: 3   NTSELACTYAALILHDDGIEITAEKIAKLVKAANVNVESYWPSLFAKLCQKKNIDDLIMN 62

Query: 73  ISSSAGNAAPAPVD----------------KQEEVMEESEDEMVLG 91
           + +S   AAP  ++                K+EEV EESED+MV G
Sbjct: 63  VGASGDAAAPVAINVPAAAQAVPSAEETKKKKEEVKEESEDDMVFG 108

[Close]

BLAST of Cla97C01G000080.2 vs. ExPASy TrEMBL
Match: A0A397XR95 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA09T36288Z PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 13  STSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------LS 72
           +TSELACTYAALILH D I + AEKI+K V AA++ VESYWPSLF+            ++
Sbjct: 3   NTSELACTYAALILHDDGIEITAEKIAKLVKAANVNVESYWPSLFAKLCQKKNIDDLIMN 62

Query: 73  ISSSAGNAAPAPVD----------------KQEEVMEESEDEMVLG 91
           + +S   AAP   +                K+EEV EESED+MV G
Sbjct: 63  VGASGDAAAPVATNVPAAAQAVPAAEETKKKKEEVKEESEDDMVFG 108

[Close]

BLAST of Cla97C01G000080.2 vs. TAIR 10
Match: AT5G24510.1 (60S acidic ribosomal protein family )

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-13
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 12  MSTSELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LSI 71
           MSTSELACTYAALILH D I + AE ISK V  A++ VESYWPSLF+          L +
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 72  SSSAG---------NAAPA-------PVDKQEE---VMEESEDEMVLG 91
           +  AG          AAP        P +K+ E   + EESED+M++G
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIG 108

[Close]

BLAST of Cla97C01G000080.2 vs. TAIR 10
Match: AT1G01100.3 (60S acidic ribosomal protein family )

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 36/93 (38.71%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 12 MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS------------ 71
          MST  ELAC+YA +IL  + I++ A+KI+  V AA +++ESYWP LF+            
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 72 LSISSSAGNAAPAPVD-KQEEVMEESEDEMVLG 91
          +++ +  G AAPA  + K++E  EES+ ++  G
Sbjct: 61 MNVGAGGGGAAPAAEEKKKDEPAEESDGDLGFG 93

[Close]

BLAST of Cla97C01G000080.2 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-07
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 12 MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LS 71
          MST  ELAC+YA +IL  + I++ A+KI+  V AA +T+ESYWP LF+          L 
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 72 ISSSAGNAAPAPV 74
          ++  AG    APV
Sbjct: 61 MNVGAGGGGGAPV 73

[Close]

BLAST of Cla97C01G000080.2 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-07
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 12 MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLFS----------LS 71
          MST  ELAC+YA +IL  + I++ A+KI+  V AA +T+ESYWP LF+          L 
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 72 ISSSAGNAAPAPV 74
          ++  AG    APV
Sbjct: 61 MNVGAGGGGGAPV 73

[Close]

BLAST of Cla97C01G000080.2 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family )

HSP 1 Score: 50.4 bits (119), Expect = 8.7e-07
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 12  MST-SELACTYAALILHGDAISVAAEKISKSVNAASLTVESYWPSLF------------- 71
           MST  ELAC+YA +IL  + I++ ++KI+  V AA + +ESYWP LF             
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 72  --------------SLSISSSAGN---AAPAPVDKQEEVMEESEDEMVLG 91
                         S +  ++AG    AAPA  +K++E  EES+ ++  G
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFG 110

The following BLAST results are available for this feature:

BLAST of Cla97C01G000080.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138164.1	1.6e-15	53.21	60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]	[more]
XP_022138163.1	1.5e-13	51.43	60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]	[more]
XP_006394706.1	3.8e-12	46.79	60S acidic ribosomal protein P1 [Eutrema salsugineum] >ESQ31992.1 hypothetical p...	[more]
XP_009111636.1	1.4e-11	46.23	60S acidic ribosomal protein P1 isoform X2 [Brassica rapa]	[more]
XP_013659163.1	3.2e-11	46.23	60S acidic ribosomal protein P1 isoform X2 [Brassica napus]	[more]

BLAST of Cla97C01G000080.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	1.6e-10	42.72	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
P27464	8.2e-10	47.83	60S acidic ribosomal protein P1 OS=Polyorchis penicillatus OX=6091 PE=3 SV=1	[more]
P29763	2.0e-08	40.40	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]
P18660	7.7e-08	35.64	60S acidic ribosomal protein P1 OS=Gallus gallus OX=9031 GN=RPLP1 PE=3 SV=1	[more]
P47955	1.0e-07	34.86	60S acidic ribosomal protein P1 OS=Mus musculus OX=10090 GN=Rplp1 PE=1 SV=1	[more]

BLAST of Cla97C01G000080.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C9A3	7.9e-16	53.21	60S acidic ribosomal protein P1-like isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CC92	7.4e-14	51.43	60S acidic ribosomal protein P1-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
V4KQ04	1.8e-12	46.79	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005602mg PE=...	[more]
M4F610	6.9e-12	46.23	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1	[more]
A0A397XR95	1.5e-11	46.23	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA09T36288Z PE=3 SV=...	[more]

BLAST of Cla97C01G000080.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24510.1	2.1e-13	46.30	60S acidic ribosomal protein family	[more]
AT1G01100.3	2.4e-09	38.71	60S acidic ribosomal protein family	[more]
AT5G47700.1	1.7e-07	43.84	60S acidic ribosomal protein family	[more]
AT5G47700.2	1.7e-07	43.84	60S acidic ribosomal protein family	[more]
AT4G00810.1	8.7e-07	33.64	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 12..64 e-value: 1.7E-18 score: 68.2
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 12..58
None	No IPR available	PANTHER	PTHR45696:SF20	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 12..58
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 16..54 e-value: 7.1073E-14 score: 59.6427

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G000080	Cla97C01G000080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G000080.2-exon	Cla97C01G000080.2-exon-Cla97Chr01:53475..53525	exon
Cla97C01G000080.2-exon	Cla97C01G000080.2-exon-Cla97Chr01:53719..53844	exon
Cla97C01G000080.2-exon	Cla97C01G000080.2-exon-Cla97Chr01:53922..54023	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G000080.2-cds	Cla97C01G000080.2-cds-Cla97Chr01:53475..53525	CDS
Cla97C01G000080.2-cds	Cla97C01G000080.2-cds-Cla97Chr01:53719..53844	CDS
Cla97C01G000080.2-cds	Cla97C01G000080.2-cds-Cla97Chr01:53922..54023	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G000080.2	Cla97C01G000080.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity