ClCG06G012055.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G012055.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr06: 25187039 .. 25187329 (-)
Sequence length	291
RNA-Seq Expression	ClCG06G012055.1
Synteny	ClCG06G012055.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTGGATCATGTGTGTTTGATGGAAGCATTTCGATACAACACTTTCTGATTGAACGAAGGCCTTACCATCGAAACTGTGGCTGTGCATTACACGACCATCGAAGAATAAAAAACGGAGCTGCTTGTTTGCATTCTCTCAAACTCAAAACCTCTGTTTCCTTTCTCAAAACCCAAAAATGGACAAAACCTTCTCTCCACTTACTTCATTCCTCTTCCAAACTCTCCTCTCAACAACTTAACTCTGAACCTCCTCCTTTTCTTTCCCAATTTTCAACTTCTTCATAG

mRNA sequence

ATGGGGATTGGATCATGTGTGTTTGATGGAAGCATTTCGATACAACACTTTCTGATTGAACGAAGGCCTTACCATCGAAACTGTGGCTGTGCATTACACGACCATCGAAGAATAAAAAACGGAGCTGCTTGTTTGCATTCTCTCAAACTCAAAACCTCTGTTTCCTTTCTCAAAACCCAAAAATGGACAAAACCTTCTCTCCACTTACTTCATTCCTCTTCCAAACTCTCCTCTCAACAACTTAACTCTGAACCTCCTCCTTTTCTTTCCCAATTTTCAACTTCTTCATAG

Coding sequence (CDS)

ATGGGGATTGGATCATGTGTGTTTGATGGAAGCATTTCGATACAACACTTTCTGATTGAACGAAGGCCTTACCATCGAAACTGTGGCTGTGCATTACACGACCATCGAAGAATAAAAAACGGAGCTGCTTGTTTGCATTCTCTCAAACTCAAAACCTCTGTTTCCTTTCTCAAAACCCAAAAATGGACAAAACCTTCTCTCCACTTACTTCATTCCTCTTCCAAACTCTCCTCTCAACAACTTAACTCTGAACCTCCTCCTTTTCTTTCCCAATTTTCAACTTCTTCATAG

Protein sequence

MGIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPPFLSQFSTSS

Homology

[Close]

BLAST of ClCG06G012055.1 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3   IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKW 62
           +GSCVFDGS+S+Q FLIERRPYHRNCGCALHD  R +NGAAC H++KLK SVSFLKTQK 
Sbjct: 65  VGSCVFDGSLSMQDFLIERRPYHRNCGCALHDD-RFRNGAACSHAMKLKNSVSFLKTQKC 124

Query: 63  TKPSLHLLHSSSKLSSQQ-LNSEPPPFLSQFSTSS 97
              SL +L SSSK+SS+Q +NSE P F+SQFSTSS
Sbjct: 125 PITSLQILRSSSKVSSRQFVNSESPSFVSQFSTSS 158

[Close]

BLAST of ClCG06G012055.1 vs. NCBI nr
Match: KGN65216.1 (hypothetical protein Csa_019753 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 2   GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQK 61
           G+GS VFDGS+S+Q FLIERRPYHRNCGCALHD  RI+NGAAC H+LK K SVSFLKTQK
Sbjct: 6   GVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDD-RIRNGAACSHALKSKNSVSFLKTQK 65

Query: 62  WTKPSLHLLHSSSKLSSQQLNSEPPP----FLSQFSTSS 97
             K SL +L SSS+   Q +NSE PP    F+ QFSTSS
Sbjct: 66  CPKTSLQILPSSSR---QFVNSESPPPPLHFVYQFSTSS 100

[Close]

BLAST of ClCG06G012055.1 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-13
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 3  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKW 62
          +G CVFDGSIS+  FLIERRPYHRNCGCAL  H R KNG  C H+  L TSVSFLK +KW
Sbjct: 6  MGGCVFDGSISMHDFLIERRPYHRNCGCAL--HHRAKNG-GCPHA--LNTSVSFLKARKW 65

Query: 63 TKPSLHLLHSSSKLSS 79
          T      + + S+ S+
Sbjct: 66 TDTCRLQIQAMSEFSA 76

[Close]

BLAST of ClCG06G012055.1 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 7.9e-13
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 3  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKW 62
          +G CVFDGSIS++ FLIERRPYHRNCGCAL  H R+KNG  C H+  L +SVSFLK +KW
Sbjct: 6  MGGCVFDGSISMRDFLIERRPYHRNCGCAL--HHRLKNG-GCPHA--LNSSVSFLKARKW 65

Query: 63 TKPSLHLLHSSSKLSS 79
          T      + + S+ S+
Sbjct: 66 TDTCRLQIQAMSEFSA 76

[Close]

BLAST of ClCG06G012055.1 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-12
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 3  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKW 62
          +G CVFDGSIS+  FLIERRPYHRNCGCAL  H R KNG  C H+  L TSVSFLK +KW
Sbjct: 6  MGGCVFDGSISMHDFLIERRPYHRNCGCAL--HHRAKNG-GCPHA--LNTSVSFLKARKW 65

Query: 63 TKPSLHLLHSSSKLSSQQLNSEPPPFLSQFSTSS 97
          T      + + S+ S+   ++ P   L   S+ +
Sbjct: 66 TDTCRLQIQAMSEFSA---HAAPTSLLHHLSSDA 91

[Close]

BLAST of ClCG06G012055.1 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3   IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKW 62
           +GSCVFDGS+S+Q FLIERRPYHRNCGCALHD  R +NGAAC H++KLK SVSFLKTQK 
Sbjct: 65  VGSCVFDGSLSMQDFLIERRPYHRNCGCALHDD-RFRNGAACSHAMKLKNSVSFLKTQKC 124

Query: 63  TKPSLHLLHSSSKLSSQQ-LNSEPPPFLSQFSTSS 97
              SL +L SSSK+SS+Q +NSE P F+SQFSTSS
Sbjct: 125 PITSLQILRSSSKVSSRQFVNSESPSFVSQFSTSS 158

[Close]

BLAST of ClCG06G012055.1 vs. ExPASy TrEMBL
Match: A0A0A0LZ02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 2   GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQK 61
           G+GS VFDGS+S+Q FLIERRPYHRNCGCALHD  RI+NGAAC H+LK K SVSFLKTQK
Sbjct: 6   GVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDD-RIRNGAACSHALKSKNSVSFLKTQK 65

Query: 62  WTKPSLHLLHSSSKLSSQQLNSEPPP----FLSQFSTSS 97
             K SL +L SSS+   Q +NSE PP    F+ QFSTSS
Sbjct: 66  CPKTSLQILPSSSR---QFVNSESPPPPLHFVYQFSTSS 100

[Close]

BLAST of ClCG06G012055.1 vs. ExPASy TrEMBL
Match: A0A2P6RIE3 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086591 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 3  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKW 62
          I  CVF+GS+S+Q   IERRPYH+NC CALH  +R     AC  +   + ++SF K Q W
Sbjct: 10 IFQCVFEGSLSMQDTEIERRPYHKNCNCALHKSKR----GACSDACPQQRNISFPKKQLW 69

Query: 63 TKPSLHLLHSSSKLSSQQ 81
          T  SL +  ++SK+SS Q
Sbjct: 70 TDGSLCISAATSKISSSQ 83

[Close]

BLAST of ClCG06G012055.1 vs. ExPASy TrEMBL
Match: A0A2P6RIF2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086581 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-09
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 3  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKW 62
          I  CVF+GS+S+Q   IERRPYH+NC CALH  +    G ACL++   + ++SF K Q W
Sbjct: 10 IFQCVFEGSLSMQDTEIERRPYHKNCNCALHKSK----GGACLNACP-QRNISFPKKQSW 69

Query: 63 TKPSLHLLHSSSKLSSQQLNS 84
          T  SL +  ++SK+SS   N+
Sbjct: 70 TDGSLCMSAATSKVSSHPRNT 85

[Close]

BLAST of ClCG06G012055.1 vs. ExPASy TrEMBL
Match: A0A1R3G2J8 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29281 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 6  CVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKP 65
          CVF+GSI +Q  LIERRPYHRNCGCALH     K   AC  +     ++SF K  KW + 
Sbjct: 12 CVFEGSIVMQDTLIERRPYHRNCGCALH-----KLKGACSSTCFGTRNLSFPKKHKWNEC 71

Query: 66 SLHLLHSSSKLSSQ 80
          SL +  S+SK SSQ
Sbjct: 72 SLSVSISASKFSSQ 80

[Close]

BLAST of ClCG06G012055.1 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 2  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAA-CLHSLKLKTSVSFLKTQ 61
          GI   +F+G IS     I+RRPYH+NCGCALH+  R    A  C H       V F   +
Sbjct: 8  GIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHG--RSEVVMFPIQR 67

Query: 62 KWTKPSLHLLHSSSKLSSQQLNS 84
           W++ +   LH +S  SS  L S
Sbjct: 68 SWSEGNSLALHLASSSSSSNLQS 88

[Close]

BLAST of ClCG06G012055.1 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.9e-06
Identity = 32/89 (35.96%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 2  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHD-------HRRIKNGAACLHSLKLKTSV 61
          GI   +F+G IS     IERRPYH+NCGCALHD       ++  +   +C        S+
Sbjct: 5  GIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRH-GSSESI 64

Query: 62 SFLKTQKWTK---PSLHLLHSSSKLSSQQ 81
          SF   + W++    +++L  SSS  S+ Q
Sbjct: 65 SFPIRRSWSEGNIMAMNLFSSSSSSSNLQ 92

The following BLAST results are available for this feature:

BLAST of ClCG06G012055.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050036.1	2.5e-27	72.63	hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK0364...	[more]
KGN65216.1	4.5e-24	68.69	hypothetical protein Csa_019753 [Cucumis sativus]	[more]
XP_023531633.1	7.9e-13	59.21	uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6587851.1	7.9e-13	57.89	hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023531631.1	3.0e-12	51.06	uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG06G012055.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G012055.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U781	1.2e-27	72.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LZ02	2.2e-24	68.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1	[more]
A0A2P6RIE3	2.6e-09	47.44	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086591 PE=4...	[more]
A0A2P6RIF2	3.4e-09	46.91	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086581 PE=4...	[more]
A0A1R3G2J8	5.7e-09	52.70	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29281 PE=4 ...	[more]

BLAST of ClCG06G012055.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35110.1	1.8e-07	39.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G46490.1	5.9e-06	35.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..96
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 5..80
None	No IPR available	PANTHER	PTHR35121:SF8	SUBFAMILY NOT NAMED	coord: 5..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG06G012055	ClCG06G012055	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG06G012055.1-exon	ClCG06G012055.1-exon-CG_Chr06:25187039..25187329	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG06G012055.1-cds	ClCG06G012055.1-cds-CG_Chr06:25187039..25187329	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG06G012055.1	ClCG06G012055.1-protein	polypeptide