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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGAGCAGCTTCGATGCATCTTCCAACGCGGGGCAAGCAGATCAGGTGCATCTCCAGCGCGAGGAAACCATATCTGGTGCGAGGCAAGCAAATCCAGCTTAGGACGAATCGACGACATGTGGTTTTGGATGATGAGGGTCGACGATGTGGGGTGGTTTATATTGTATTGTCACATGGATACTGTTATATCGAAACTACTTTGCTTTTTCGATATATGCTTAAATCACCCTATGTATATTGTGATATATATCTTCAATTTTTTATTGAGACTTTCTGTTTTATGATATATATACTAATATATATTGAACATTAAGTTCATTTGTGATTTATATACAGTGGTAGATAGTTTTGTTTATTTGAAAATAATGAAGTTTTAAATTGAATTTGAAAAGATAACAATAATTGAGAATTAGAGATTTCAATTAAGGAGGTTATGTTAAATTTACTTAAATGGAATTTGGTCAATCTTACTAGTATATTCATATATTTGTTAGAATATTTGCAAACATCTAAGACAAATGTTCTAAAGTATATTTAAAAATAACCATGAATCTAAGCTAGGATATATATGAGATAATAACACAAAATAAACAACCTCAAAATAAACAATAAACTATAATAGACAAACTCAAATAAGTCAGACCATCATATAAAAATTGCATTAGAATAACATATATATTACATGCACACAAGTGATGCCTAATTAGTAGGCTATACATATTAGAATATCTCGTATATATCCCAAATAAACAATAGAATATATATATATATATATCACACAATATCACAAATCAAACGTTAAATGCATTCTCTCTCTAATTAAAAATGGAAAAAAAATATATTAAATGCATTTTATCTCTCTATAATAAATACATTTTCTCTTTCTGTCACTAAAGGAGTCTCGTAAATACGGTACTATATACAAAAATTGGACAAAAAATAATTTAAAAAATGGCAAATTAAATGAATTTTCTCTCTCCATAATAAATGCATTTTCTCTTCCCGTTATTAGAGGAGACTCTTAAATAAATAAATATATATAAAAAAAATTGGACAAAAAAATAATAAAAAAGGGCAAATTTGCCAAAAATAACATTAAAAACCTTTATTGAATAAATTCAAACACTTTTTAGAATATATGGAGATGGTTCTTTTGTATTAAAAATTAAACTTTCCTATTGTTTTTGTTTTTGTTTTTTTTTTTTTCTCCATTTCTCCATATCATTTTAGAGGGAAGCTAAGCTCTCTTGGCCAAAGTAGACCTTGTTGAGTTGTCCAAAGGTAATTATGATGACTTTTTTTTAGAACTCGGAGCAAACAAGTTTTAAAATGTTAAAGGATCACCACTTTGCCCACAGTTAATCAAATCCTCCACGTCCTCTGTCATCAGTTACCCACCAGAACCAAACCGTCAAACTACAGTTAATCAAAGGTTTGAAATTCCAAAGTCCTGGCAGGATTTGAAGTTCTGAAGCATTTCTCTCAAAATTCCATGATTCCCATAATGCAAAAACTCTCATCTTTTACACATTTTTTCACTTCTGATCCCTCGCCCTTCCCATCTCTTCTCCTACTCCTCCTCGTCTTCACCTTCCATATCCCCACATGTGGTTTCTTCTCTTACCACCATTTTCCAAGGTCTTCTCTTATTTATTATAACAATTGTGCTGCCCATCCTAAGCTACTGTGCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTATACGAGCAGCGCCAGTCGCCTTACTCGTGGCAGCAAGTTGGTTGAGTCAGAAGGAGTCGGCTGGAACCGCAGCCAGGAAGTGGGGGTCCCAGGACTGCTGTGGTTCCACCATTTCGGAACACAAGGCAGAGGCTGATGAAGTTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTGCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGCATGTGA mRNA sequence ATGGCGAGCAGCTTCGATGCATCTTCCAACGCGGGGCAAGCAGATCAGGTGCATCTCCAGCGCGAGGAAACCATATCTGGATTTGAAGTTCTGAAGCATTTCTCTCAAAATTCCATGATTCCCATAATGCAAAAACTCTCATCTTTTACACATTTTTTCACTTCTGATCCCTCGCCCTTCCCATCTCTTCTCCTACTCCTCCTCGTCTTCACCTTCCATATCCCCACATGTGGTTTCTTCTCTTACCACCATTTTCCAAGGTCTTCTCTTATTTATTATAACAATTGTGCTGCCCATCCTAAGCTACTGTGCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTATACGAGCAGCGCCAGTCGCCTTACTCGTGGCAGCAAGTTGGTTGAGTCAGAAGGAGTCGGCTGGAACCGCAGCCAGGAAGTGGGGGTCCCAGGACTGCTGTGGTTCCACCATTTCGGAACACAAGGCAGAGGCTGATGAAGTTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTGCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGCATGTGA Coding sequence (CDS) ATGGCGAGCAGCTTCGATGCATCTTCCAACGCGGGGCAAGCAGATCAGGTGCATCTCCAGCGCGAGGAAACCATATCTGGATTTGAAGTTCTGAAGCATTTCTCTCAAAATTCCATGATTCCCATAATGCAAAAACTCTCATCTTTTACACATTTTTTCACTTCTGATCCCTCGCCCTTCCCATCTCTTCTCCTACTCCTCCTCGTCTTCACCTTCCATATCCCCACATGTGGTTTCTTCTCTTACCACCATTTTCCAAGGTCTTCTCTTATTTATTATAACAATTGTGCTGCCCATCCTAAGCTACTGTGCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTATACGAGCAGCGCCAGTCGCCTTACTCGTGGCAGCAAGTTGGTTGAGTCAGAAGGAGTCGGCTGGAACCGCAGCCAGGAAGTGGGGGTCCCAGGACTGCTGTGGTTCCACCATTTCGGAACACAAGGCAGAGGCTGATGAAGTTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTGCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGCATGTGA Protein sequence MASSFDASSNAGQADQVHLQREETISGFEVLKHFSQNSMIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAAHPKLLCSPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGSTISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
Homology
BLAST of ClCG01G008870.1 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa]) HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63 Identity = 126/165 (76.36%), Postives = 139/165 (84.24%), Query Frame = 0
Query: 39 MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAA 98
MIP+MQK+ SFT+F TSDPSPFPSLLL+LL+FTFHIP C FFSYHHFP L YY NC
Sbjct: 1 MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYY-NCVG 60
Query: 99 HPKLLC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGST 158
+ K+LC SPRRLP GGWA+RAAP+ALLV SWLSQKESAG AARKWGSQ C ST
Sbjct: 61 NHKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVST 120
Query: 159 ISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
ISEHKAE +E+GGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 ISEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164
BLAST of ClCG01G008870.1 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus]) HSP 1 Score: 251.5 bits (641), Expect = 5.9e-63 Identity = 128/165 (77.58%), Postives = 137/165 (83.03%), Query Frame = 0
Query: 39 MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAA 98
MIPIMQK+SSFTHF TSDPSPFPSLLLLLL+FTFHI C FFSYHHFP L YY NC
Sbjct: 1 MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYY-NCVG 60
Query: 99 HPKLLC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGST 158
+ K+LC SPRRLP GGWA+RAAP+ALLV SWLSQKESAG AARKW SQ ST
Sbjct: 61 NHKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVST 120
Query: 159 ISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
ISEHKAE +E+GGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 ISEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164
BLAST of ClCG01G008870.1 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 209.1 bits (531), Expect = 3.4e-50 Identity = 106/163 (65.03%), Postives = 124/163 (76.07%), Query Frame = 0
Query: 39 MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYY----N 98
MIPIM KLSS TH TSDPSPFPSLLLLLL+FT HIPTC FFSY SL Y+ +
Sbjct: 1 MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS 60
Query: 99 NCAAHPKLLCSPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGSTI- 158
N +P + SP+RLPCGGW++R AP+ALLV SWL++K++ G AAR WGS+ C TI
Sbjct: 61 NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL 120
Query: 159 --SEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 195
+H+ EA+ +GGCTPWVLVGMILLLFNMAQRQALIRHCLFV
Sbjct: 121 DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163
BLAST of ClCG01G008870.1 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 9.8e-64 Identity = 126/165 (76.36%), Postives = 139/165 (84.24%), Query Frame = 0
Query: 39 MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAA 98
MIP+MQK+ SFT+F TSDPSPFPSLLL+LL+FTFHIP C FFSYHHFP L YY NC
Sbjct: 1 MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYY-NCVG 60
Query: 99 HPKLLC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGST 158
+ K+LC SPRRLP GGWA+RAAP+ALLV SWLSQKESAG AARKWGSQ C ST
Sbjct: 61 NHKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVST 120
Query: 159 ISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
ISEHKAE +E+GGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 ISEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164
BLAST of ClCG01G008870.1 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 6.0e-61 Identity = 124/161 (77.02%), Postives = 133/161 (82.61%), Query Frame = 0
Query: 43 MQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAAHPKL 102
MQK+SSFTHF TSDPSPFPSLLLLLL+FTFHI C FFSYHHFP L YY NC + K+
Sbjct: 1 MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYY-NCVGNHKI 60
Query: 103 LC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGSTISEH 162
LC SPRRLP GGWA+RAAP+ALLV SWLSQKESAG AARKW SQ STISEH
Sbjct: 61 LCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEH 120
Query: 163 KAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
KAE +E+GGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 KAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0043344.1 | 2.0e-63 | 76.36 | hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... | [more] |
| KAE8653331.1 | 5.9e-63 | 77.58 | hypothetical protein Csa_023242 [Cucumis sativus] | [more] |
| KAG6573437.1 | 3.4e-50 | 65.03 | hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TJ52 | 9.8e-64 | 76.36 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0LW23 | 6.0e-61 | 77.02 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| ClCG01G008870.1-exon | ClCG01G008870.1-exon-CG_Chr01:10881436..10881514 | exon |
| ClCG01G008870.1-exon | ClCG01G008870.1-exon-CG_Chr01:10882896..10883410 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| ClCG01G008870.1-cds | ClCG01G008870.1-cds-CG_Chr01:10881436..10881514 | CDS |
| ClCG01G008870.1-cds | ClCG01G008870.1-cds-CG_Chr01:10882896..10883410 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| ClCG01G008870.1 | ClCG01G008870.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
