ClCG01G008870 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G008870
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 10881436 .. 10883410 (+)
RNA-Seq ExpressionClCG01G008870
SyntenyClCG01G008870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGCAGCTTCGATGCATCTTCCAACGCGGGGCAAGCAGATCAGGTGCATCTCCAGCGCGAGGAAACCATATCTGGTGCGAGGCAAGCAAATCCAGCTTAGGACGAATCGACGACATGTGGTTTTGGATGATGAGGGTCGACGATGTGGGGTGGTTTATATTGTATTGTCACATGGATACTGTTATATCGAAACTACTTTGCTTTTTCGATATATGCTTAAATCACCCTATGTATATTGTGATATATATCTTCAATTTTTTATTGAGACTTTCTGTTTTATGATATATATACTAATATATATTGAACATTAAGTTCATTTGTGATTTATATACAGTGGTAGATAGTTTTGTTTATTTGAAAATAATGAAGTTTTAAATTGAATTTGAAAAGATAACAATAATTGAGAATTAGAGATTTCAATTAAGGAGGTTATGTTAAATTTACTTAAATGGAATTTGGTCAATCTTACTAGTATATTCATATATTTGTTAGAATATTTGCAAACATCTAAGACAAATGTTCTAAAGTATATTTAAAAATAACCATGAATCTAAGCTAGGATATATATGAGATAATAACACAAAATAAACAACCTCAAAATAAACAATAAACTATAATAGACAAACTCAAATAAGTCAGACCATCATATAAAAATTGCATTAGAATAACATATATATTACATGCACACAAGTGATGCCTAATTAGTAGGCTATACATATTAGAATATCTCGTATATATCCCAAATAAACAATAGAATATATATATATATATATCACACAATATCACAAATCAAACGTTAAATGCATTCTCTCTCTAATTAAAAATGGAAAAAAAATATATTAAATGCATTTTATCTCTCTATAATAAATACATTTTCTCTTTCTGTCACTAAAGGAGTCTCGTAAATACGGTACTATATACAAAAATTGGACAAAAAATAATTTAAAAAATGGCAAATTAAATGAATTTTCTCTCTCCATAATAAATGCATTTTCTCTTCCCGTTATTAGAGGAGACTCTTAAATAAATAAATATATATAAAAAAAATTGGACAAAAAAATAATAAAAAAGGGCAAATTTGCCAAAAATAACATTAAAAACCTTTATTGAATAAATTCAAACACTTTTTAGAATATATGGAGATGGTTCTTTTGTATTAAAAATTAAACTTTCCTATTGTTTTTGTTTTTGTTTTTTTTTTTTTCTCCATTTCTCCATATCATTTTAGAGGGAAGCTAAGCTCTCTTGGCCAAAGTAGACCTTGTTGAGTTGTCCAAAGGTAATTATGATGACTTTTTTTTAGAACTCGGAGCAAACAAGTTTTAAAATGTTAAAGGATCACCACTTTGCCCACAGTTAATCAAATCCTCCACGTCCTCTGTCATCAGTTACCCACCAGAACCAAACCGTCAAACTACAGTTAATCAAAGGTTTGAAATTCCAAAGTCCTGGCAGGATTTGAAGTTCTGAAGCATTTCTCTCAAAATTCCATGATTCCCATAATGCAAAAACTCTCATCTTTTACACATTTTTTCACTTCTGATCCCTCGCCCTTCCCATCTCTTCTCCTACTCCTCCTCGTCTTCACCTTCCATATCCCCACATGTGGTTTCTTCTCTTACCACCATTTTCCAAGGTCTTCTCTTATTTATTATAACAATTGTGCTGCCCATCCTAAGCTACTGTGCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTATACGAGCAGCGCCAGTCGCCTTACTCGTGGCAGCAAGTTGGTTGAGTCAGAAGGAGTCGGCTGGAACCGCAGCCAGGAAGTGGGGGTCCCAGGACTGCTGTGGTTCCACCATTTCGGAACACAAGGCAGAGGCTGATGAAGTTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTGCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGCATGTGA

mRNA sequence

ATGGCGAGCAGCTTCGATGCATCTTCCAACGCGGGGCAAGCAGATCAGGTGCATCTCCAGCGCGAGGAAACCATATCTGGATTTGAAGTTCTGAAGCATTTCTCTCAAAATTCCATGATTCCCATAATGCAAAAACTCTCATCTTTTACACATTTTTTCACTTCTGATCCCTCGCCCTTCCCATCTCTTCTCCTACTCCTCCTCGTCTTCACCTTCCATATCCCCACATGTGGTTTCTTCTCTTACCACCATTTTCCAAGGTCTTCTCTTATTTATTATAACAATTGTGCTGCCCATCCTAAGCTACTGTGCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTATACGAGCAGCGCCAGTCGCCTTACTCGTGGCAGCAAGTTGGTTGAGTCAGAAGGAGTCGGCTGGAACCGCAGCCAGGAAGTGGGGGTCCCAGGACTGCTGTGGTTCCACCATTTCGGAACACAAGGCAGAGGCTGATGAAGTTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTGCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGCATGTGA

Coding sequence (CDS)

ATGGCGAGCAGCTTCGATGCATCTTCCAACGCGGGGCAAGCAGATCAGGTGCATCTCCAGCGCGAGGAAACCATATCTGGATTTGAAGTTCTGAAGCATTTCTCTCAAAATTCCATGATTCCCATAATGCAAAAACTCTCATCTTTTACACATTTTTTCACTTCTGATCCCTCGCCCTTCCCATCTCTTCTCCTACTCCTCCTCGTCTTCACCTTCCATATCCCCACATGTGGTTTCTTCTCTTACCACCATTTTCCAAGGTCTTCTCTTATTTATTATAACAATTGTGCTGCCCATCCTAAGCTACTGTGCAGTCCTAGAAGGTTGCCTTGTGGTGGTTGGGCTATACGAGCAGCGCCAGTCGCCTTACTCGTGGCAGCAAGTTGGTTGAGTCAGAAGGAGTCGGCTGGAACCGCAGCCAGGAAGTGGGGGTCCCAGGACTGCTGTGGTTCCACCATTTCGGAACACAAGGCAGAGGCTGATGAAGTTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATGATACTACTGCTATTCAATATGGCTCAACGCCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGCATGTGA

Protein sequence

MASSFDASSNAGQADQVHLQREETISGFEVLKHFSQNSMIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAAHPKLLCSPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGSTISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM
Homology
[Close]
BLAST of ClCG01G008870 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63
Identity = 126/165 (76.36%), Postives = 139/165 (84.24%), Query Frame = 0 

Query: 39  MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAA 98
           MIP+MQK+ SFT+F TSDPSPFPSLLL+LL+FTFHIP C FFSYHHFP   L YY NC  
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYY-NCVG 60

Query: 99  HPKLLC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGST 158
           + K+LC      SPRRLP GGWA+RAAP+ALLV  SWLSQKESAG AARKWGSQ C  ST
Sbjct: 61  NHKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVST 120

Query: 159 ISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
           ISEHKAE +E+GGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 ISEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of ClCG01G008870 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 5.9e-63
Identity = 128/165 (77.58%), Postives = 137/165 (83.03%), Query Frame = 0 

Query: 39  MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAA 98
           MIPIMQK+SSFTHF TSDPSPFPSLLLLLL+FTFHI  C FFSYHHFP   L YY NC  
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYY-NCVG 60

Query: 99  HPKLLC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGST 158
           + K+LC      SPRRLP GGWA+RAAP+ALLV  SWLSQKESAG AARKW SQ    ST
Sbjct: 61  NHKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVST 120

Query: 159 ISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
           ISEHKAE +E+GGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 ISEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of ClCG01G008870 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.1 bits (531), Expect = 3.4e-50
Identity = 106/163 (65.03%), Postives = 124/163 (76.07%), Query Frame = 0 

Query: 39  MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYY----N 98
           MIPIM KLSS TH  TSDPSPFPSLLLLLL+FT HIPTC FFSY      SL Y+    +
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS 60

Query: 99  NCAAHPKLLCSPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGSTI- 158
           N   +P  + SP+RLPCGGW++R AP+ALLV  SWL++K++ G AAR WGS+ C   TI 
Sbjct: 61  NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL 120

Query: 159 --SEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 195
              +H+ EA+ +GGCTPWVLVGMILLLFNMAQRQALIRHCLFV
Sbjct: 121 DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

[Close]
BLAST of ClCG01G008870 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.8e-64
Identity = 126/165 (76.36%), Postives = 139/165 (84.24%), Query Frame = 0 

Query: 39  MIPIMQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAA 98
           MIP+MQK+ SFT+F TSDPSPFPSLLL+LL+FTFHIP C FFSYHHFP   L YY NC  
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYY-NCVG 60

Query: 99  HPKLLC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGST 158
           + K+LC      SPRRLP GGWA+RAAP+ALLV  SWLSQKESAG AARKWGSQ C  ST
Sbjct: 61  NHKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVST 120

Query: 159 ISEHKAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
           ISEHKAE +E+GGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 ISEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of ClCG01G008870 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.0e-61
Identity = 124/161 (77.02%), Postives = 133/161 (82.61%), Query Frame = 0 

Query: 43  MQKLSSFTHFFTSDPSPFPSLLLLLLVFTFHIPTCGFFSYHHFPRSSLIYYNNCAAHPKL 102
           MQK+SSFTHF TSDPSPFPSLLLLLL+FTFHI  C FFSYHHFP   L YY NC  + K+
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYY-NCVGNHKI 60

Query: 103 LC------SPRRLPCGGWAIRAAPVALLVAASWLSQKESAGTAARKWGSQDCCGSTISEH 162
           LC      SPRRLP GGWA+RAAP+ALLV  SWLSQKESAG AARKW SQ    STISEH
Sbjct: 61  LCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEH 120

Query: 163 KAEADEVGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSM 198
           KAE +E+GGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRSM
Sbjct: 121 KAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

The following BLAST results are available for this feature:
BLAST of ClCG01G008870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043344.12.0e-6376.36hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAE8653331.15.9e-6377.58hypothetical protein Csa_023242 [Cucumis sativus][more]
KAG6573437.13.4e-5065.03hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of ClCG01G008870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G008870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TJ529.8e-6476.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LW236.0e-6177.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
BLAST of ClCG01G008870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G008870.1ClCG01G008870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane