CcUC05G106580.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G106580.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr05: 33728695 .. 33731291 (-)
Sequence length	1812
RNA-Seq Expression	CcUC05G106580.1
Synteny	CcUC05G106580.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGTCTCCTGTATTCCAACTTGCCAATTTACTCTCACAAAACCAAGCTCCACCTTTTCCAAGAATGAGTTCATGAATCCACCCCACCCTCTTTCTCTTTTGTCCAAATGTACATCTCTCAGGGAGCTCAAGCAAATTCAAGCCTATACCATGAAAACCAATCTTCAGAATGACATCTCTGTTCTCACTAAGCTCATTAATTTCTGCACACTCAACCCCACAATTTCGTCCATGGACCATGCCCACCATCTGTTCGATCAAATTCCTGACAAGGATATTGTCCTCTTTAACATAATGGCACGTGGTTATGCTCGCTCTAATTCTCCTTATCTTGCCTTTTCTCTTTTTGCTCAACTCCTGTGCTCTGGCCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCAAGTTCTAAGGCCTTGAAAGAAGGTATGGAGTTGCATTGTTTTGCTATTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCAGCGCGTGGAGTGTTTGATGAAATGGAGCAGCCATGTATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAACGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCAAGCAATCTTGAGCCTACTGATGTTACTATGCTTAGTGTAATTATGTCATGTGCTTTGTTGGGAGCACTAGACCTGGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCGAAATGCGGAAGTCTAACTGATGCTATTTCTATCTTTGAGGGCATGCATGTGAGAGATACACAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCTATCTCAATGTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCAGGGCTAGTAGAGCAAGGTAGAGGGTATTTCTATAGTATGTCTAAAAACTATGGAATAACTCCAGGGATCAAACATTATGGGTGTATGGTGGATTTGCTAGGTCGAACAGGTCGTTTAGATGAGGCTTATAACTTCATACATGAACTGGAAATTAAGCCCACACCTATACTCTGGCGCACCTTGTTATCTGCTTGCAGCACCCATGGTAATGTCGACATGGCAAAACGGGTTATTGACAGAATTTTTGAATTAGATGACTCTCACGGAGGGGACTATGTTATATTATCAAACTTGTGTGCTAGAGTAGGAAGATGGGAAGATGTGAATCATTTAAGGAAATTGATGAAAGATAGAGGGGTGGTGAAAGTTCCTGGATGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCATTTCGGTGGAGTTGCGCCGAGCACTTGATGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTTCCTGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGGGAAAGAACTTGTCCTGAGATATCATAGTGAAAAATTGGCCATGGCTTTTGGACTCCTAAATACACCTCCTGGTACAACAATAAGGGTAGTCAAGAATCTCCGGATTTGTGGAGATTGCCATAACACTGCAAAACTTTTATCTTTAATTTTTGGGAGGCAAATTGTAATTAGAGACGTTCAACGATTCCATCGATTTGAAGATGGGAAATGCTCCTGTGGTGATTTCTGGTAATAGAATATGTAGAAATCTCAAGCTATTCTTACAGTTTAATATGTCTTTCCTACAATGGCCATGGTTTGCTATTCATTTAGTATTTCTTCATGGGGAACCTTTATGTTTGTATAGCAACCAAGGAATTCAGAGCAAGATTGATTTGGAGATTGGACCTCCCCGTATATTTATCAGTGTAGCATTGATCATTGCATGTATTGGATCAAAATAAAGTACATAACCATCAGATGAACATATTTCTACACCATCACTACACCATATACCAACACAAACTGAGCTGATCAGTAATTGGTATATATTCCTTTCTTTGAAGTCAGATAATAAAATCTTCATACCCCACATTAACTATTGGATGAAATATTTCTAGATCATCAGCGGACTTGTTGTTAAAATCTTTTCTATACTTCCTCTGACAGCCAAGAGTCAACCATGGATTTTGGTTGCTATCTATGGCGCATTCATTATGCTCCTTCTAATTACAATCAGACCACAGAAGTTGAATGATGAACTTTACCATCTATTACCATTCCTTATTTACTGCAGTAGCCAAGTTCTAGATGCCGTACAGAAGATTAAACATTGGAGACTCATAAAGTTTATTCCAAATTTTCCAATTCTGACTTTTTTTTTTTTTTTTTAATAATAAATTTAATGCTTTACCTATATTTAGCGTGGACAGATTTCTTGAGCATTATTACTCTTTCTTTCTATGTACTAATTTTTTTTTTCAATTGTTTAATAAATTATTTATCATAAATTTTGTATCCCCAGTTACGTCCTCGTGA

mRNA sequence

ATGCCTGTCTCCTGTATTCCAACTTGCCAATTTACTCTCACAAAACCAAGCTCCACCTTTTCCAAGAATGAGTTCATGAATCCACCCCACCCTCTTTCTCTTTTGTCCAAATGTACATCTCTCAGGGAGCTCAAGCAAATTCAAGCCTATACCATGAAAACCAATCTTCAGAATGACATCTCTGTTCTCACTAAGCTCATTAATTTCTGCACACTCAACCCCACAATTTCGTCCATGGACCATGCCCACCATCTGTTCGATCAAATTCCTGACAAGGATATTGTCCTCTTTAACATAATGGCACGTGGTTATGCTCGCTCTAATTCTCCTTATCTTGCCTTTTCTCTTTTTGCTCAACTCCTGTGCTCTGGCCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCAAGTTCTAAGGCCTTGAAAGAAGGTATGGAGTTGCATTGTTTTGCTATTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCAGCGCGTGGAGTGTTTGATGAAATGGAGCAGCCATGTATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAACGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCAAGCAATCTTGAGCCTACTGATGTTACTATGCTTAGTGTAATTATGTCATGTGCTTTGTTGGGAGCACTAGACCTGGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCGAAATGCGGAAGTCTAACTGATGCTATTTCTATCTTTGAGGGCATGCATGTGAGAGATACACAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCTATCTCAATGTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCAGGGCTAGTAGAGCAAGGTAGAGGGTATTTCTATAGTATGTCTAAAAACTATGGAATAACTCCAGGGATCAAACATTATGGGTGTATGGTGGATTTGCTAGGTCGAACAGGTCGTTTAGATGAGGCTTATAACTTCATACATGAACTGGAAATTAAGCCCACACCTATACTCTGGCGCACCTTGTTATCTGCTTGCAGCACCCATGGTAATGTCGACATGGCAAAACGGGTTATTGACAGAATTTTTGAATTAGATGACTCTCACGGAGGGGACTATGTTATATTATCAAACTTGTGTGCTAGAGTAGGAAGATGGGAAGATGTGAATCATTTAAGGAAATTGATGAAAGATAGAGGGGTGGTGAAAGTTCCTGGATGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCATTTCGGTGGAGTTGCGCCGAGCACTTGATGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTTCCTGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGGGAAAGAACTTGTCCTGAGATATCATAGTGAAAAATTGGCCATGGCTTTTGGACTCCTAAATACACCTCCTGGTACAACAATAAGGGTAGTCAAGAATCTCCGGATTTGTGGAGATTGCCATAACACTGCAAAACTTTTATCTTTAATTTTTGGGAGGCAAATTGTAATTAGAGACGTTCAACGATTCCATCGATTTGAAGATGGGAAATGCTCCTGTGTTACGTCCTCGTGA

Coding sequence (CDS)

ATGCCTGTCTCCTGTATTCCAACTTGCCAATTTACTCTCACAAAACCAAGCTCCACCTTTTCCAAGAATGAGTTCATGAATCCACCCCACCCTCTTTCTCTTTTGTCCAAATGTACATCTCTCAGGGAGCTCAAGCAAATTCAAGCCTATACCATGAAAACCAATCTTCAGAATGACATCTCTGTTCTCACTAAGCTCATTAATTTCTGCACACTCAACCCCACAATTTCGTCCATGGACCATGCCCACCATCTGTTCGATCAAATTCCTGACAAGGATATTGTCCTCTTTAACATAATGGCACGTGGTTATGCTCGCTCTAATTCTCCTTATCTTGCCTTTTCTCTTTTTGCTCAACTCCTGTGCTCTGGCCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCAAGTTCTAAGGCCTTGAAAGAAGGTATGGAGTTGCATTGTTTTGCTATTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCAGCGCGTGGAGTGTTTGATGAAATGGAGCAGCCATGTATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAACGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCAAGCAATCTTGAGCCTACTGATGTTACTATGCTTAGTGTAATTATGTCATGTGCTTTGTTGGGAGCACTAGACCTGGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCGAAATGCGGAAGTCTAACTGATGCTATTTCTATCTTTGAGGGCATGCATGTGAGAGATACACAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCTATCTCAATGTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCAGGGCTAGTAGAGCAAGGTAGAGGGTATTTCTATAGTATGTCTAAAAACTATGGAATAACTCCAGGGATCAAACATTATGGGTGTATGGTGGATTTGCTAGGTCGAACAGGTCGTTTAGATGAGGCTTATAACTTCATACATGAACTGGAAATTAAGCCCACACCTATACTCTGGCGCACCTTGTTATCTGCTTGCAGCACCCATGGTAATGTCGACATGGCAAAACGGGTTATTGACAGAATTTTTGAATTAGATGACTCTCACGGAGGGGACTATGTTATATTATCAAACTTGTGTGCTAGAGTAGGAAGATGGGAAGATGTGAATCATTTAAGGAAATTGATGAAAGATAGAGGGGTGGTGAAAGTTCCTGGATGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCATTTCGGTGGAGTTGCGCCGAGCACTTGATGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTTCCTGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGGGAAAGAACTTGTCCTGAGATATCATAGTGAAAAATTGGCCATGGCTTTTGGACTCCTAAATACACCTCCTGGTACAACAATAAGGGTAGTCAAGAATCTCCGGATTTGTGGAGATTGCCATAACACTGCAAAACTTTTATCTTTAATTTTTGGGAGGCAAATTGTAATTAGAGACGTTCAACGATTCCATCGATTTGAAGATGGGAAATGCTCCTGTGTTACGTCCTCGTGA

Protein sequence

MPVSCIPTCQFTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWSAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKRVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSCVTSS

Homology

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BLAST of CcUC05G106580.1 vs. NCBI nr
Match: XP_038893049.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Benincasa hispida])

HSP 1 Score: 1167.5 bits (3019), Expect = 0.0e+00
Identity = 566/599 (94.49%), Postives = 582/599 (97.16%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDI 60
           M VSCIPTCQFTLTKPSSTFS NEF+N PHPLSLLSKCTSLRELKQIQAYT+KTNLQND+
Sbjct: 1   MTVSCIPTCQFTLTKPSSTFSNNEFINQPHPLSLLSKCTSLRELKQIQAYTIKTNLQNDV 60

Query: 61  SVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQL 120
           SVLTKLIN CT NPT SSMD+AHHLFDQI DKDIVLFNIMARGYARSNSP LAFSLFA++
Sbjct: 61  SVLTKLINICTRNPTTSSMDYAHHLFDQISDKDIVLFNIMARGYARSNSPNLAFSLFAKV 120

Query: 121 LCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 180
           L SGLLPDDYTFSSLLKACASSKA K+GMELHCFAIKLGLNHNIYICPTLINMYAECNDM
Sbjct: 121 LSSGLLPDDYTFSSLLKACASSKAFKQGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 180

Query: 181 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSC 240
           NAARGVFDE+EQPCIVSYNAIITGYARSSQPNEALSLFRELQAS+LEPTDVTMLS+IMSC
Sbjct: 181 NAARGVFDEIEQPCIVSYNAIITGYARSSQPNEALSLFRELQASHLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWS 300
           ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSL DAISIFEGM VRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKN 360
           AMIVAFATHGDGLKAISMFEEMKR GVRPDEITFLGLLYACSHAGLVEQGR YFY+MSKN
Sbjct: 301 AMIVAFATHGDGLKAISMFEEMKRTGVRPDEITFLGLLYACSHAGLVEQGREYFYNMSKN 360

Query: 361 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKR 420
           YGITPGIKHYGCMVDLLGRTGRLDEAYNFI ELEIKPTP+LWRTLLSACSTHGNVDMAKR
Sbjct: 361 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIDELEIKPTPVLWRTLLSACSTHGNVDMAKR 420

Query: 421 VIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           V +RIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VTERIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540
           EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540

Query: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           MAFGLLNTPPGTTIRVVKNLRICGDCHN AKL+SLIFGRQI+IRDVQRFHRFE+GKCSC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIIIRDVQRFHRFENGKCSC 599

[Close]

BLAST of CcUC05G106580.1 vs. NCBI nr
Match: XP_008446357.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucumis melo] >KAA0034422.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17712.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1156.4 bits (2990), Expect = 0.0e+00
Identity = 559/600 (93.17%), Postives = 584/600 (97.33%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEF-MNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQND 60
           M +SCIPTCQFTLTKPSSTFSKNEF +N  HPLSLLSKCTSL+ELKQIQAYT+KTNLQ+D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQ 120
           ISVLTKLINFCTLNPT S MDHAHHLFDQI DKDI+LFNIMARGYARSNSPYLAFSLFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 121 LLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECND 180
           LLCSGLLPDDYTFSSLLKACASSKAL++GM LHCFA+KLGLNHNIYICPTLINMYAECND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMS 240
           MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLSVIMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAW 300
           CALLGALDLG+WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM VRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360
           SAMIVAFATHGDGLK+IS+FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS+
Sbjct: 301 SAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSR 360

Query: 361 NYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAK 420
            YGITPGIKHYGCMVDLLGRTG LDEAYNF+ ELEIKPTPILWRTLLSACSTHGNV+MAK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVI+RIFELDDSHGGDYVILSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL 540
           HEFFSGDGVHC+SVELRRALDEL+KEIKLVGY+PDTSLVYHADM+EEGKELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           AMAFGLLNTPPGTTIRV KNLRICGDCHN AKL+S IFGR+IVIRDVQRFH+FEDGKCSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSC 600

[Close]

BLAST of CcUC05G106580.1 vs. NCBI nr
Match: XP_031742214.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucumis sativus])

HSP 1 Score: 1152.5 bits (2980), Expect = 0.0e+00
Identity = 559/600 (93.17%), Postives = 578/600 (96.33%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEF-MNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQND 60
           M +SCIPTCQFTLTKPSS FSKNEF +N  HPLSLLSKCTSL ELKQIQAYT+KTNLQ+D
Sbjct: 1   MAISCIPTCQFTLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQ 120
           ISVLTKLINFCTLNPT S MDHAHHLFDQI DKDI+LFNIMARGYARSNSPYLAFSLF +
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGE 120

Query: 121 LLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECND 180
           LLCSGLLPDDYTFSSLLKACASSKAL+EGM LHCFA+KLGLNHNIYICPTLINMYAECND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMS 240
           MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASN+EPTDVTMLSVIMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAW 300
           CALLGALDLG+WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM VRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360
           SAMIVAFATHGDGLKAISMFEEMKR GVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK
Sbjct: 301 SAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360

Query: 361 NYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAK 420
            YGITPGIKHYGCMVDLLGR G LDEAYNF+ +LEIK TPILWRTLLSACSTHGNV+MAK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVI+RIFELDD+HGGDYVILSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL 540
           HEFFSGDGVHC+SVELRRALDEL+KEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           AMAFGLLNTPPGTTIRV KNLRICGDCHN AKL+S IFGR+IVIRDVQRFHRFEDGKCSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSC 600

[Close]

BLAST of CcUC05G106580.1 vs. NCBI nr
Match: XP_022151060.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 1128.6 bits (2918), Expect = 0.0e+00
Identity = 544/599 (90.82%), Postives = 569/599 (94.99%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDI 60
           M +SCIP+CQFTL KP+S F  NEF NPPHPL LLSKCTSLRELKQIQA+T+KTNLQNDI
Sbjct: 1   MGISCIPSCQFTLAKPNSAFPNNEFTNPPHPLFLLSKCTSLRELKQIQAFTIKTNLQNDI 60

Query: 61  SVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQL 120
           SVLTK+INFCTLNP+ SSMDHAHHLFDQIPDKDIVLFNIMARGYARSN+PYLAFSLF+Q+
Sbjct: 61  SVLTKIINFCTLNPSTSSMDHAHHLFDQIPDKDIVLFNIMARGYARSNTPYLAFSLFSQV 120

Query: 121 LCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 180
           LCSGLLPDDYTFSSLLKACASSKA  EG +LHCFAIKLGLNHNIYICP+LIN+YAECNDM
Sbjct: 121 LCSGLLPDDYTFSSLLKACASSKAFSEGRQLHCFAIKLGLNHNIYICPSLINLYAECNDM 180

Query: 181 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSC 240
           NAARGVFDEME PCIVSYNAIITG+ARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSC
Sbjct: 181 NAARGVFDEMEAPCIVSYNAIITGHARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWS 300
           ALLGALDLGRWIHEYVKKKGFDK+VKVNTALIDM+AKCGSL DAISIFE M VRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSLVDAISIFEDMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKN 360
           AMIVA+ATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVE+GRGYF SMSK 
Sbjct: 301 AMIVAYATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEEGRGYFNSMSKY 360

Query: 361 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKR 420
           YGI PGIKHYGCMVDLLGRTG LDEAY FI   EIKPTPILWRTLLSACS  GNVD+AKR
Sbjct: 361 YGIAPGIKHYGCMVDLLGRTGHLDEAYKFIDGSEIKPTPILWRTLLSACSNRGNVDLAKR 420

Query: 421 VIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VI+RIFELDDSHGGDYVILSNLCARVGRWEDVNH+RKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARVGRWEDVNHIRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540
           EFFSGDGVH ISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540

Query: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           +AFGLLN+PPGT IRVVKNLRICGDCH  AKL+S IFGRQIVIRDVQRFHRFEDGKCSC
Sbjct: 541 IAFGLLNSPPGTPIRVVKNLRICGDCHTAAKLISFIFGRQIVIRDVQRFHRFEDGKCSC 599

[Close]

BLAST of CcUC05G106580.1 vs. NCBI nr
Match: XP_023541252.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1122.8 bits (2903), Expect = 0.0e+00
Identity = 545/599 (90.98%), Postives = 568/599 (94.82%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDI 60
           M +SCIPT QF L+KP     KNEF+N PHPLSL SKC+SLRELKQIQAYT+KTNL NDI
Sbjct: 1   MAISCIPTSQFALSKP-----KNEFINQPHPLSLFSKCSSLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQL 120
           SVLTKLINFCT NPTISSMDHAHHLFD++ DKDIVLFNIMARGYARSNSPYL FSLFAQ+
Sbjct: 61  SVLTKLINFCTRNPTISSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120

Query: 121 LCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 180
           LCSGLLPDDYTFSSLLKACA SKAL+EG +LHCFAIKLGL HNIYICPTLINMYA CNDM
Sbjct: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSC 240
           NAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWS 300
           ALLGALDLGRWIHEYVKKKGFDK+VKVNTALIDM+AKCGS+ DAISIFEGM VRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKN 360
           AMIVAFATHGDGLKAISMFEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYFYSM KN
Sbjct: 301 AMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKR 420
           +GITPGIKHYGCMVDLLGRTGRLDEAY FI EL IKPTPILWRTLLSACS HGNVD+AKR
Sbjct: 361 HGITPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VI+RIFELDDSHGGDYVILSNLCAR+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540
           EFFSGDGVH ISVELRRALDELIKEIKL GYVPDTSLVYHADMEEE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           MAFGLLNTPPGTTIRVVKNLRICGDCHN AKL+SLIFGRQIVIRDVQRFHRFEDG+CSC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSC 594

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 822.0 bits (2122), Expect = 4.4e-237
Identity = 386/589 (65.53%), Postives = 479/589 (81.32%), Query Frame = 0


Query: 11  FTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFC 70
           F+  +  +  SK + +N  +P+ L+SKC SLREL QIQAY +K++++ D+S + KLINFC
Sbjct: 12  FSHAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFC 71

Query: 71  TLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDY 130
           T +PT SSM +A HLF+ + + DIV+FN MARGY+R  +P   FSLF ++L  G+LPD+Y
Sbjct: 72  TESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNY 131

Query: 131 TFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEM 190
           TF SLLKACA +KAL+EG +LHC ++KLGL+ N+Y+CPTLINMY EC D+++AR VFD +
Sbjct: 132 TFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRI 191

Query: 191 EQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGR 250
            +PC+V YNA+ITGYAR ++PNEALSLFRE+Q   L+P ++T+LSV+ SCALLG+LDLG+
Sbjct: 192 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 251

Query: 251 WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWSAMIVAFATHG 310
           WIH+Y KK  F KYVKVNTALIDMFAKCGSL DA+SIFE M  +DTQAWSAMIVA+A HG
Sbjct: 252 WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHG 311

Query: 311 DGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHY 370
              K++ MFE M+   V+PDEITFLGLL ACSH G VE+GR YF  M   +GI P IKHY
Sbjct: 312 KAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHY 371

Query: 371 GCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKRVIDRIFELDD 430
           G MVDLL R G L++AY FI +L I PTP+LWR LL+ACS+H N+D+A++V +RIFELDD
Sbjct: 372 GSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDD 431

Query: 431 SHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC 490
           SHGGDYVILSNL AR  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV  
Sbjct: 432 SHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKS 491

Query: 491 ISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPP 550
            + +L RALDE++KE+KL GYVPDTS+V HA+M ++ KE+ LRYHSEKLA+ FGLLNTPP
Sbjct: 492 ATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPP 551

Query: 551 GTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           GTTIRVVKNLR+C DCHN AKL+SLIFGR++V+RDVQRFH FEDGKCSC
Sbjct: 552 GTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSC 599

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 1.5e-136
Identity = 237/601 (39.43%), Postives = 367/601 (61.06%), Query Frame = 0


Query: 29  PHPLSLLSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFCTLNPTISS---------- 88
           P  L   +K  + +E +QI  + +K     D+ V T LI+    N  +            
Sbjct: 138 PFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH 197

Query: 89  ------------------MDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQL 148
                             +++A  LFD+IP KD+V +N M  GYA + +   A  LF  +
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257

Query: 149 LCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 208
           + + + PD+ T  +++ ACA S +++ G ++H +    G   N+ I   LI++Y++C ++
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317

Query: 209 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSC 268
             A G+F+ +    ++S+N +I GY   +   EAL LF+E+  S   P DVTMLS++ +C
Sbjct: 318 ETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 377

Query: 269 ALLGALDLGRWIHEYVKK--KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQA 328
           A LGA+D+GRWIH Y+ K  KG      + T+LIDM+AKCG +  A  +F  +  +   +
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 329 WSAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS 388
           W+AMI  FA HG    +  +F  M++ G++PD+ITF+GLL ACSH+G+++ GR  F +M+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497

Query: 389 KNYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMA 448
           ++Y +TP ++HYGCM+DLLG +G   EA   I+ +E++P  ++W +LL AC  HGNV++ 
Sbjct: 498 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELG 557

Query: 449 KRVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNV 508
           +   + + +++  + G YV+LSN+ A  GRW +V   R L+ D+G+ KVPGCSS+E+++V
Sbjct: 558 ESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 617

Query: 509 VHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEK 568
           VHEF  GD  H  + E+   L+E+   ++  G+VPDTS V   +MEEE KE  LR+HSEK
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHSEK 677

Query: 569 LAMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCS 600
           LA+AFGL++T PGT + +VKNLR+C +CH   KL+S I+ R+I+ RD  RFH F DG CS
Sbjct: 678 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCS 737

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 3.3e-136
Identity = 232/599 (38.73%), Postives = 362/599 (60.43%), Query Frame = 0


Query: 32  LSLLSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFCTLNPTISSMDHAHHLFDQIPD 91
           +S L +C+   ELKQI A  +KT L  D   +TK ++FC  + +   + +A  +FD    
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 92  KDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALKEGMEL 151
            D  L+N+M RG++ S+ P  +  L+ ++LCS    + YTF SLLKAC++  A +E  ++
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 152 HCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQP 211
           H    KLG  +++Y   +LIN YA   +   A  +FD + +P  VS+N++I GY ++ + 
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 212 N-------------------------------EALSLFRELQASNLEPTDVTMLSVIMSC 271
           +                               EAL LF E+Q S++EP +V++ + + +C
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

Query: 272 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWS 331
           A LGAL+ G+WIH Y+ K        +   LIDM+AKCG + +A+ +F+ +  +  QAW+
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317

Query: 332 AMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKN 391
           A+I  +A HG G +AIS F EM++ G++P+ ITF  +L ACS+ GLVE+G+  FYSM ++
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377

Query: 392 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKR 451
           Y + P I+HYGC+VDLLGR G LDEA  FI E+ +KP  ++W  LL AC  H N+++ + 
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437

Query: 452 VIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 511
           + + +  +D  HGG YV  +N+ A   +W+     R+LMK++GV KVPGCS++ +    H
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497

Query: 512 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 571
           EF +GD  H    +++     + ++++  GYVP+   +    ++++ +E ++  HSEKLA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557

Query: 572 MAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           + +GL+ T PGT IR++KNLR+C DCH   KL+S I+ R IV+RD  RFH F DGKCSC
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSC 616

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 4.5e-133
Identity = 234/571 (40.98%), Postives = 363/571 (63.57%), Query Frame = 0


Query: 32  LSLLSKCTSLREL---KQIQAYTMKTNLQNDISVLTKLINFCTLNPTISSMDHAHHLFDQ 91
           +S+L   ++LR +   K+I  Y M++   + +++ T L++   +     S++ A  LFD 
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD---MYAKCGSLETARQLFDG 299

Query: 92  IPDKDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALKEG 151
           + ++++V +N M   Y ++ +P  A  +F ++L  G+ P D +    L ACA    L+ G
Sbjct: 300 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 359

Query: 152 MELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARS 211
             +H  +++LGL+ N+ +  +LI+MY +C +++ A  +F +++   +VS+NA+I G+A++
Sbjct: 360 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 419

Query: 212 SQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKKKGFDKYVKVN 271
            +P +AL+ F ++++  ++P   T +SVI + A L      +WIH  V +   DK V V 
Sbjct: 420 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVT 479

Query: 272 TALIDMFAKCGSLTDAISIFEGMHVRDTQAWSAMIVAFATHGDGLKAISMFEEMKRAGVR 331
           TAL+DM+AKCG++  A  IF+ M  R    W+AMI  + THG G  A+ +FEEM++  ++
Sbjct: 480 TALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIK 539

Query: 332 PDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGRLDEAYN 391
           P+ +TFL ++ ACSH+GLVE G   FY M +NY I   + HYG MVDLLGR GRL+EA++
Sbjct: 540 PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWD 599

Query: 392 FIHELEIKPTPILWRTLLSACSTHGNVDMAKRVIDRIFELDDSHGGDYVILSNLCARVGR 451
           FI ++ +KP   ++  +L AC  H NV+ A++  +R+FEL+   GG +V+L+N+      
Sbjct: 600 FIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASM 659

Query: 452 WEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKL 511
           WE V  +R  M  +G+ K PGCS VE+ N VH FFSG   H  S ++   L++LI  IK 
Sbjct: 660 WEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKE 719

Query: 512 VGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHN 571
            GYVPDT+LV    +E + KE +L  HSEKLA++FGLLNT  GTTI V KNLR+C DCHN
Sbjct: 720 AGYVPDTNLV--LGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHN 779

Query: 572 TAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
             K +SL+ GR+IV+RD+QRFH F++G CSC
Sbjct: 780 ATKYISLVTGREIVVRDMQRFHHFKNGACSC 805

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 2.9e-132
Identity = 241/623 (38.68%), Postives = 370/623 (59.39%), Query Frame = 0


Query: 30  HPLSL---LSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFC-TLNPTISSMDHAHHL 89
           HP SL   ++ C ++R+L QI A  +K+    D     +++ FC T +     +D+AH +
Sbjct: 22  HPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKI 81

Query: 90  FDQIPDKDIVLFNIMARGYARS--NSPYLAFSLFAQLLCSGLL-PDDYTFSSLLKACASS 149
           F+Q+P ++   +N + RG++ S  +   +A +LF +++    + P+ +TF S+LKACA +
Sbjct: 82  FNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 141

Query: 150 KALKEGMELHCFAIKLGLNHNIYICPTLINMYAEC------------------------- 209
             ++EG ++H  A+K G   + ++   L+ MY  C                         
Sbjct: 142 GKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDR 201

Query: 210 --------------------NDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSL 269
                                D  AAR +FD+M Q  +VS+N +I+GY+ +    +A+ +
Sbjct: 202 RKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV 261

Query: 270 FRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAK 329
           FRE++  ++ P  VT++SV+ + + LG+L+LG W+H Y +  G      + +ALIDM++K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321

Query: 330 CGSLTDAISIFEGMHVRDTQAWSAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGL 389
           CG +  AI +FE +   +   WSAMI  FA HG    AI  F +M++AGVRP ++ ++ L
Sbjct: 322 CGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381

Query: 390 LYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKP 449
           L ACSH GLVE+GR YF  M    G+ P I+HYGCMVDLLGR+G LDEA  FI  + IKP
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441

Query: 450 TPILWRTLLSACSTHGNVDMAKRVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRK 509
             ++W+ LL AC   GNV+M KRV + + ++     G YV LSN+ A  G W +V+ +R 
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 510 LMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSL 569
            MK++ + K PGCS ++++ V+HEF   D  H  + E+   L E+  +++L GY P T+ 
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQ 561

Query: 570 VYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIF 601
           V   ++EEE KE VL YHSEK+A AFGL++T PG  IR+VKNLRIC DCH++ KL+S ++
Sbjct: 562 VL-LNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVY 621

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy TrEMBL
Match: A0A5A7STH8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00400 PE=3 SV=1)

HSP 1 Score: 1156.4 bits (2990), Expect = 0.0e+00
Identity = 559/600 (93.17%), Postives = 584/600 (97.33%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEF-MNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQND 60
           M +SCIPTCQFTLTKPSSTFSKNEF +N  HPLSLLSKCTSL+ELKQIQAYT+KTNLQ+D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQ 120
           ISVLTKLINFCTLNPT S MDHAHHLFDQI DKDI+LFNIMARGYARSNSPYLAFSLFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 121 LLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECND 180
           LLCSGLLPDDYTFSSLLKACASSKAL++GM LHCFA+KLGLNHNIYICPTLINMYAECND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMS 240
           MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLSVIMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAW 300
           CALLGALDLG+WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM VRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360
           SAMIVAFATHGDGLK+IS+FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS+
Sbjct: 301 SAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSR 360

Query: 361 NYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAK 420
            YGITPGIKHYGCMVDLLGRTG LDEAYNF+ ELEIKPTPILWRTLLSACSTHGNV+MAK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVI+RIFELDDSHGGDYVILSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL 540
           HEFFSGDGVHC+SVELRRALDEL+KEIKLVGY+PDTSLVYHADM+EEGKELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           AMAFGLLNTPPGTTIRV KNLRICGDCHN AKL+S IFGR+IVIRDVQRFH+FEDGKCSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSC 600

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy TrEMBL
Match: A0A1S3BFK0 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489124 PE=3 SV=1)

HSP 1 Score: 1156.4 bits (2990), Expect = 0.0e+00
Identity = 559/600 (93.17%), Postives = 584/600 (97.33%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEF-MNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQND 60
           M +SCIPTCQFTLTKPSSTFSKNEF +N  HPLSLLSKCTSL+ELKQIQAYT+KTNLQ+D
Sbjct: 1   MAISCIPTCQFTLTKPSSTFSKNEFVINQLHPLSLLSKCTSLKELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQ 120
           ISVLTKLINFCTLNPT S MDHAHHLFDQI DKDI+LFNIMARGYARSNSPYLAFSLFAQ
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQ 120

Query: 121 LLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECND 180
           LLCSGLLPDDYTFSSLLKACASSKAL++GM LHCFA+KLGLNHNIYICPTLINMYAECND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMS 240
           MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLSVIMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAW 300
           CALLGALDLG+WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM VRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360
           SAMIVAFATHGDGLK+IS+FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS+
Sbjct: 301 SAMIVAFATHGDGLKSISIFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSR 360

Query: 361 NYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAK 420
            YGITPGIKHYGCMVDLLGRTG LDEAYNF+ ELEIKPTPILWRTLLSACSTHGNV+MAK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVI+RIFELDDSHGGDYVILSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDSHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL 540
           HEFFSGDGVHC+SVELRRALDEL+KEIKLVGY+PDTSLVYHADM+EEGKELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           AMAFGLLNTPPGTTIRV KNLRICGDCHN AKL+S IFGR+IVIRDVQRFH+FEDGKCSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSC 600

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy TrEMBL
Match: A0A0A0KU15 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605160 PE=3 SV=1)

HSP 1 Score: 1152.5 bits (2980), Expect = 0.0e+00
Identity = 559/600 (93.17%), Postives = 578/600 (96.33%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEF-MNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQND 60
           M +SCIPTCQFTLTKPSS FSKNEF +N  HPLSLLSKCTSL ELKQIQAYT+KTNLQ+D
Sbjct: 1   MAISCIPTCQFTLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSD 60

Query: 61  ISVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQ 120
           ISVLTKLINFCTLNPT S MDHAHHLFDQI DKDI+LFNIMARGYARSNSPYLAFSLF +
Sbjct: 61  ISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGE 120

Query: 121 LLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECND 180
           LLCSGLLPDDYTFSSLLKACASSKAL+EGM LHCFA+KLGLNHNIYICPTLINMYAECND
Sbjct: 121 LLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECND 180

Query: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMS 240
           MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASN+EPTDVTMLSVIMS
Sbjct: 181 MNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMS 240

Query: 241 CALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAW 300
           CALLGALDLG+WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM VRDTQAW
Sbjct: 241 CALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAW 300

Query: 301 SAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360
           SAMIVAFATHGDGLKAISMFEEMKR GVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK
Sbjct: 301 SAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK 360

Query: 361 NYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAK 420
            YGITPGIKHYGCMVDLLGR G LDEAYNF+ +LEIK TPILWRTLLSACSTHGNV+MAK
Sbjct: 361 TYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAK 420

Query: 421 RVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480
           RVI+RIFELDD+HGGDYVILSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV
Sbjct: 421 RVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVV 480

Query: 481 HEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL 540
           HEFFSGDGVHC+SVELRRALDEL+KEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL
Sbjct: 481 HEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKL 540

Query: 541 AMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           AMAFGLLNTPPGTTIRV KNLRICGDCHN AKL+S IFGR+IVIRDVQRFHRFEDGKCSC
Sbjct: 541 AMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSC 600

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy TrEMBL
Match: A0A6J1DA68 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019083 PE=3 SV=1)

HSP 1 Score: 1128.6 bits (2918), Expect = 0.0e+00
Identity = 544/599 (90.82%), Postives = 569/599 (94.99%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDI 60
           M +SCIP+CQFTL KP+S F  NEF NPPHPL LLSKCTSLRELKQIQA+T+KTNLQNDI
Sbjct: 1   MGISCIPSCQFTLAKPNSAFPNNEFTNPPHPLFLLSKCTSLRELKQIQAFTIKTNLQNDI 60

Query: 61  SVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQL 120
           SVLTK+INFCTLNP+ SSMDHAHHLFDQIPDKDIVLFNIMARGYARSN+PYLAFSLF+Q+
Sbjct: 61  SVLTKIINFCTLNPSTSSMDHAHHLFDQIPDKDIVLFNIMARGYARSNTPYLAFSLFSQV 120

Query: 121 LCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 180
           LCSGLLPDDYTFSSLLKACASSKA  EG +LHCFAIKLGLNHNIYICP+LIN+YAECNDM
Sbjct: 121 LCSGLLPDDYTFSSLLKACASSKAFSEGRQLHCFAIKLGLNHNIYICPSLINLYAECNDM 180

Query: 181 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSC 240
           NAARGVFDEME PCIVSYNAIITG+ARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSC
Sbjct: 181 NAARGVFDEMEAPCIVSYNAIITGHARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWS 300
           ALLGALDLGRWIHEYVKKKGFDK+VKVNTALIDM+AKCGSL DAISIFE M VRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSLVDAISIFEDMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKN 360
           AMIVA+ATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVE+GRGYF SMSK 
Sbjct: 301 AMIVAYATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEEGRGYFNSMSKY 360

Query: 361 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKR 420
           YGI PGIKHYGCMVDLLGRTG LDEAY FI   EIKPTPILWRTLLSACS  GNVD+AKR
Sbjct: 361 YGIAPGIKHYGCMVDLLGRTGHLDEAYKFIDGSEIKPTPILWRTLLSACSNRGNVDLAKR 420

Query: 421 VIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VI+RIFELDDSHGGDYVILSNLCARVGRWEDVNH+RKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARVGRWEDVNHIRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540
           EFFSGDGVH ISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540

Query: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           +AFGLLN+PPGT IRVVKNLRICGDCH  AKL+S IFGRQIVIRDVQRFHRFEDGKCSC
Sbjct: 541 IAFGLLNSPPGTPIRVVKNLRICGDCHTAAKLISFIFGRQIVIRDVQRFHRFEDGKCSC 599

[Close]

BLAST of CcUC05G106580.1 vs. ExPASy TrEMBL
Match: A0A6J1HTT7 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467412 PE=3 SV=1)

HSP 1 Score: 1117.4 bits (2889), Expect = 0.0e+00
Identity = 541/599 (90.32%), Postives = 565/599 (94.32%), Query Frame = 0


Query: 1   MPVSCIPTCQFTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDI 60
           M +SCIPTCQF LTKP     KNEF+N PHPLSL SKC SLRELKQIQAYT+KTNL NDI
Sbjct: 1   MAISCIPTCQFALTKP-----KNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDI 60

Query: 61  SVLTKLINFCTLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQL 120
           SVLTKLINFCT  PT SSMDHAHHLFD++ DKDIVLFNIMARGYARSNSPYL FSLFAQ+
Sbjct: 61  SVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQV 120

Query: 121 LCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 180
           LCSGLLPDDYTFSSLLKACA SKAL+EG +LHCFAIKLG  HNIYICPTLINMYA CNDM
Sbjct: 121 LCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDM 180

Query: 181 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSC 240
           NAARGVFD ME+PCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSC
Sbjct: 181 NAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSC 240

Query: 241 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWS 300
           ALLGALDLGRWIHEYVKKKGFDK+VKVNTALIDM+AKCGS+ DAISIFEGM VRDTQAWS
Sbjct: 241 ALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWS 300

Query: 301 AMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKN 360
           AMIVA+ATHGDGLKAISMFEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYFYSM KN
Sbjct: 301 AMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKN 360

Query: 361 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKR 420
           +G+TPGIKHYGCMVDLLGRTGRLDEAY FI EL IKPTPILWRTLLSACS HGNVD+AKR
Sbjct: 361 HGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKR 420

Query: 421 VIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 480
           VI+RIFELDDSHGGDYVILSNLCAR+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVH
Sbjct: 421 VIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVH 480

Query: 481 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 540
           EFFSGDGVH ISVELRRALDELI+EIKL GYVPDTSLVYHADMEEE KELVLRYHSEKLA
Sbjct: 481 EFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLA 540

Query: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           MAFGLLNTPPGTTIRVVKNLRICGDCHN AKL+SLIFGRQIVIRDVQRFHRFEDG+CSC
Sbjct: 541 MAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSC 594

[Close]

BLAST of CcUC05G106580.1 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 822.0 bits (2122), Expect = 3.1e-238
Identity = 386/589 (65.53%), Postives = 479/589 (81.32%), Query Frame = 0


Query: 11  FTLTKPSSTFSKNEFMNPPHPLSLLSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFC 70
           F+  +  +  SK + +N  +P+ L+SKC SLREL QIQAY +K++++ D+S + KLINFC
Sbjct: 12  FSHAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFC 71

Query: 71  TLNPTISSMDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDY 130
           T +PT SSM +A HLF+ + + DIV+FN MARGY+R  +P   FSLF ++L  G+LPD+Y
Sbjct: 72  TESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNY 131

Query: 131 TFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEM 190
           TF SLLKACA +KAL+EG +LHC ++KLGL+ N+Y+CPTLINMY EC D+++AR VFD +
Sbjct: 132 TFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRI 191

Query: 191 EQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGR 250
            +PC+V YNA+ITGYAR ++PNEALSLFRE+Q   L+P ++T+LSV+ SCALLG+LDLG+
Sbjct: 192 VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGK 251

Query: 251 WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWSAMIVAFATHG 310
           WIH+Y KK  F KYVKVNTALIDMFAKCGSL DA+SIFE M  +DTQAWSAMIVA+A HG
Sbjct: 252 WIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHG 311

Query: 311 DGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHY 370
              K++ MFE M+   V+PDEITFLGLL ACSH G VE+GR YF  M   +GI P IKHY
Sbjct: 312 KAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHY 371

Query: 371 GCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKRVIDRIFELDD 430
           G MVDLL R G L++AY FI +L I PTP+LWR LL+ACS+H N+D+A++V +RIFELDD
Sbjct: 372 GSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDD 431

Query: 431 SHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC 490
           SHGGDYVILSNL AR  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV  
Sbjct: 432 SHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKS 491

Query: 491 ISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPP 550
            + +L RALDE++KE+KL GYVPDTS+V HA+M ++ KE+ LRYHSEKLA+ FGLLNTPP
Sbjct: 492 ATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPP 551

Query: 551 GTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           GTTIRVVKNLR+C DCHN AKL+SLIFGR++V+RDVQRFH FEDGKCSC
Sbjct: 552 GTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSC 599

[Close]

BLAST of CcUC05G106580.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 488.0 bits (1255), Expect = 1.1e-137
Identity = 237/601 (39.43%), Postives = 367/601 (61.06%), Query Frame = 0


Query: 29  PHPLSLLSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFCTLNPTISS---------- 88
           P  L   +K  + +E +QI  + +K     D+ V T LI+    N  +            
Sbjct: 138 PFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH 197

Query: 89  ------------------MDHAHHLFDQIPDKDIVLFNIMARGYARSNSPYLAFSLFAQL 148
                             +++A  LFD+IP KD+V +N M  GYA + +   A  LF  +
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257

Query: 149 LCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDM 208
           + + + PD+ T  +++ ACA S +++ G ++H +    G   N+ I   LI++Y++C ++
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL 317

Query: 209 NAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSC 268
             A G+F+ +    ++S+N +I GY   +   EAL LF+E+  S   P DVTMLS++ +C
Sbjct: 318 ETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 377

Query: 269 ALLGALDLGRWIHEYVKK--KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQA 328
           A LGA+D+GRWIH Y+ K  KG      + T+LIDM+AKCG +  A  +F  +  +   +
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 329 WSAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS 388
           W+AMI  FA HG    +  +F  M++ G++PD+ITF+GLL ACSH+G+++ GR  F +M+
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497

Query: 389 KNYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMA 448
           ++Y +TP ++HYGCM+DLLG +G   EA   I+ +E++P  ++W +LL AC  HGNV++ 
Sbjct: 498 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELG 557

Query: 449 KRVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNV 508
           +   + + +++  + G YV+LSN+ A  GRW +V   R L+ D+G+ KVPGCSS+E+++V
Sbjct: 558 ESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 617

Query: 509 VHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEK 568
           VHEF  GD  H  + E+   L+E+   ++  G+VPDTS V   +MEEE KE  LR+HSEK
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHSEK 677

Query: 569 LAMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCS 600
           LA+AFGL++T PGT + +VKNLR+C +CH   KL+S I+ R+I+ RD  RFH F DG CS
Sbjct: 678 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCS 737

[Close]

BLAST of CcUC05G106580.1 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 486.9 bits (1252), Expect = 2.4e-137
Identity = 232/599 (38.73%), Postives = 362/599 (60.43%), Query Frame = 0


Query: 32  LSLLSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFCTLNPTISSMDHAHHLFDQIPD 91
           +S L +C+   ELKQI A  +KT L  D   +TK ++FC  + +   + +A  +FD    
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 92  KDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALKEGMEL 151
            D  L+N+M RG++ S+ P  +  L+ ++LCS    + YTF SLLKAC++  A +E  ++
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQI 137

Query: 152 HCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQP 211
           H    KLG  +++Y   +LIN YA   +   A  +FD + +P  VS+N++I GY ++ + 
Sbjct: 138 HAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197

Query: 212 N-------------------------------EALSLFRELQASNLEPTDVTMLSVIMSC 271
           +                               EAL LF E+Q S++EP +V++ + + +C
Sbjct: 198 DIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSAC 257

Query: 272 ALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMHVRDTQAWS 331
           A LGAL+ G+WIH Y+ K        +   LIDM+AKCG + +A+ +F+ +  +  QAW+
Sbjct: 258 AQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWT 317

Query: 332 AMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKN 391
           A+I  +A HG G +AIS F EM++ G++P+ ITF  +L ACS+ GLVE+G+  FYSM ++
Sbjct: 318 ALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERD 377

Query: 392 YGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKPTPILWRTLLSACSTHGNVDMAKR 451
           Y + P I+HYGC+VDLLGR G LDEA  FI E+ +KP  ++W  LL AC  H N+++ + 
Sbjct: 378 YNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 437

Query: 452 VIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVH 511
           + + +  +D  HGG YV  +N+ A   +W+     R+LMK++GV KVPGCS++ +    H
Sbjct: 438 IGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTH 497

Query: 512 EFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA 571
           EF +GD  H    +++     + ++++  GYVP+   +    ++++ +E ++  HSEKLA
Sbjct: 498 EFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLA 557

Query: 572 MAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
           + +GL+ T PGT IR++KNLR+C DCH   KL+S I+ R IV+RD  RFH F DGKCSC
Sbjct: 558 ITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSC 616

[Close]

BLAST of CcUC05G106580.1 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 476.5 bits (1225), Expect = 3.2e-134
Identity = 234/571 (40.98%), Postives = 363/571 (63.57%), Query Frame = 0


Query: 32  LSLLSKCTSLREL---KQIQAYTMKTNLQNDISVLTKLINFCTLNPTISSMDHAHHLFDQ 91
           +S+L   ++LR +   K+I  Y M++   + +++ T L++   +     S++ A  LFD 
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD---MYAKCGSLETARQLFDG 299

Query: 92  IPDKDIVLFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKACASSKALKEG 151
           + ++++V +N M   Y ++ +P  A  +F ++L  G+ P D +    L ACA    L+ G
Sbjct: 300 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 359

Query: 152 MELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARS 211
             +H  +++LGL+ N+ +  +LI+MY +C +++ A  +F +++   +VS+NA+I G+A++
Sbjct: 360 RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQN 419

Query: 212 SQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKKKGFDKYVKVN 271
            +P +AL+ F ++++  ++P   T +SVI + A L      +WIH  V +   DK V V 
Sbjct: 420 GRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVT 479

Query: 272 TALIDMFAKCGSLTDAISIFEGMHVRDTQAWSAMIVAFATHGDGLKAISMFEEMKRAGVR 331
           TAL+DM+AKCG++  A  IF+ M  R    W+AMI  + THG G  A+ +FEEM++  ++
Sbjct: 480 TALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIK 539

Query: 332 PDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGRLDEAYN 391
           P+ +TFL ++ ACSH+GLVE G   FY M +NY I   + HYG MVDLLGR GRL+EA++
Sbjct: 540 PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWD 599

Query: 392 FIHELEIKPTPILWRTLLSACSTHGNVDMAKRVIDRIFELDDSHGGDYVILSNLCARVGR 451
           FI ++ +KP   ++  +L AC  H NV+ A++  +R+FEL+   GG +V+L+N+      
Sbjct: 600 FIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASM 659

Query: 452 WEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKL 511
           WE V  +R  M  +G+ K PGCS VE+ N VH FFSG   H  S ++   L++LI  IK 
Sbjct: 660 WEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKE 719

Query: 512 VGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHN 571
            GYVPDT+LV    +E + KE +L  HSEKLA++FGLLNT  GTTI V KNLR+C DCHN
Sbjct: 720 AGYVPDTNLV--LGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHN 779

Query: 572 TAKLLSLIFGRQIVIRDVQRFHRFEDGKCSC 600
             K +SL+ GR+IV+RD+QRFH F++G CSC
Sbjct: 780 ATKYISLVTGREIVVRDMQRFHHFKNGACSC 805

[Close]

BLAST of CcUC05G106580.1 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 473.8 bits (1218), Expect = 2.1e-133
Identity = 241/623 (38.68%), Postives = 370/623 (59.39%), Query Frame = 0


Query: 30  HPLSL---LSKCTSLRELKQIQAYTMKTNLQNDISVLTKLINFC-TLNPTISSMDHAHHL 89
           HP SL   ++ C ++R+L QI A  +K+    D     +++ FC T +     +D+AH +
Sbjct: 22  HPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKI 81

Query: 90  FDQIPDKDIVLFNIMARGYARS--NSPYLAFSLFAQLLCSGLL-PDDYTFSSLLKACASS 149
           F+Q+P ++   +N + RG++ S  +   +A +LF +++    + P+ +TF S+LKACA +
Sbjct: 82  FNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKT 141

Query: 150 KALKEGMELHCFAIKLGLNHNIYICPTLINMYAEC------------------------- 209
             ++EG ++H  A+K G   + ++   L+ MY  C                         
Sbjct: 142 GKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDR 201

Query: 210 --------------------NDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSL 269
                                D  AAR +FD+M Q  +VS+N +I+GY+ +    +A+ +
Sbjct: 202 RKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV 261

Query: 270 FRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAK 329
           FRE++  ++ P  VT++SV+ + + LG+L+LG W+H Y +  G      + +ALIDM++K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321

Query: 330 CGSLTDAISIFEGMHVRDTQAWSAMIVAFATHGDGLKAISMFEEMKRAGVRPDEITFLGL 389
           CG +  AI +FE +   +   WSAMI  FA HG    AI  F +M++AGVRP ++ ++ L
Sbjct: 322 CGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381

Query: 390 LYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGRLDEAYNFIHELEIKP 449
           L ACSH GLVE+GR YF  M    G+ P I+HYGCMVDLLGR+G LDEA  FI  + IKP
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441

Query: 450 TPILWRTLLSACSTHGNVDMAKRVIDRIFELDDSHGGDYVILSNLCARVGRWEDVNHLRK 509
             ++W+ LL AC   GNV+M KRV + + ++     G YV LSN+ A  G W +V+ +R 
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 510 LMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSL 569
            MK++ + K PGCS ++++ V+HEF   D  H  + E+   L E+  +++L GY P T+ 
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQ 561

Query: 570 VYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNTAKLLSLIF 601
           V   ++EEE KE VL YHSEK+A AFGL++T PG  IR+VKNLRIC DCH++ KL+S ++
Sbjct: 562 VL-LNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVY 621

The following BLAST results are available for this feature:

BLAST of CcUC05G106580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893049.1	0.0e+00	94.49	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Benincasa ...	[more]
XP_008446357.1	0.0e+00	93.17	PREDICTED: pentatricopeptide repeat-containing protein At2g02980, chloroplastic ...	[more]
XP_031742214.1	0.0e+00	93.17	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucumis sa...	[more]
XP_022151060.1	0.0e+00	90.82	pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 ...	[more]
XP_023541252.1	0.0e+00	90.98	pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita ...	[more]

BLAST of CcUC05G106580.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LK93	4.4e-237	65.53	Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop...	[more]
Q9LN01	1.5e-136	39.43	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9FJY7	3.3e-136	38.73	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
Q3E6Q1	4.5e-133	40.98	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
Q9FI80	2.9e-132	38.68	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]

BLAST of CcUC05G106580.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STH8	0.0e+00	93.17	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BFK0	0.0e+00	93.17	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis ...	[more]
A0A0A0KU15	0.0e+00	93.17	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6051...	[more]
A0A6J1DA68	0.0e+00	90.82	pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 ...	[more]
A0A6J1HTT7	0.0e+00	90.32	pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbit...	[more]

BLAST of CcUC05G106580.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02980.1	3.1e-238	65.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G08070.1	1.1e-137	39.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	2.4e-137	38.73	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G11290.1	3.2e-134	40.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G48910.1	2.1e-133	38.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 31..146 e-value: 2.6E-15 score: 58.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 147..245 e-value: 3.5E-21 score: 77.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 246..360 e-value: 5.0E-24 score: 87.3 coord: 361..505 e-value: 1.1E-14 score: 56.6
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 468..593 e-value: 1.7E-36 score: 124.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 269..293 e-value: 0.031 score: 14.5 coord: 436..464 e-value: 0.9 score: 9.9 coord: 401..425 e-value: 0.13 score: 12.5 coord: 370..393 e-value: 0.18 score: 12.1 coord: 169..191 e-value: 0.048 score: 13.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 193..240 e-value: 3.8E-10 score: 39.8 coord: 295..341 e-value: 1.6E-9 score: 37.8 coord: 92..140 e-value: 5.1E-9 score: 36.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 95..128 e-value: 0.0014 score: 16.6 coord: 196..229 e-value: 1.8E-7 score: 28.9 coord: 298..331 e-value: 1.7E-6 score: 25.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 194..228 score: 11.619036
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 295..329 score: 11.564229
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 93..127 score: 9.63504
None	No IPR available	PANTHER	PTHR47926:SF132	BNAA02G26650D PROTEIN	coord: 22..589
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 22..589

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G106580	CcUC05G106580	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G106580.1-exon	CcUC05G106580.1-exon-CicolChr05:33728695..33728708	exon
CcUC05G106580.1-exon	CcUC05G106580.1-exon-CicolChr05:33729494..33731291	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G106580.1-cds	CcUC05G106580.1-cds-CicolChr05:33728695..33728708	CDS
CcUC05G106580.1-cds	CcUC05G106580.1-cds-CicolChr05:33729494..33731291	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G106580.1	CcUC05G106580.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
biological_process	GO:0031425	chloroplast RNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding