CcUC05G105420.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G105420.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr05: 32906950 .. 32907665 (-)
Sequence length	631
RNA-Seq Expression	CcUC05G105420.1
Synteny	CcUC05G105420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGGTCATATGAATTCTTGTGATTTCTGTTGCATTTCCCCCTTAAAAAGAAAGATTTTTTTTTTTTTTTTTTTAATTGGGAGGAACAGAGTCAACGACAGAGTTGTGACGGTCGGAAGGGCCGGAAGGAGGAATCGGAACGCCTCTGGGAAGAAAGCTGAAGGTCTGGCCGACATATCGGAAGCCAGTCTTGTAATTGAAATAAGAATTCGACATGTCGGAATTATTCATCCCATGATGTTCCATCATTTTACCCGGCCGAGTTGCAGAGGAAAACCCAGAAAGAAGAAGAAGAAAGATGAAAATGGCGATGGGATTGAGTTTGCATTGGAAGAAAGAAGAAGAAGAAGGCATTGTGTGTTATGAAAGAACTAATTGCATGGGGAATTATTAATATAAAGGAGTATTTATAATAGGGAAATAAAAGGTCAACGGGGATTCTAATGTAAAGGACGTTAATTTCGCAGGATTGCGTTACAAAATTTCAAATATAATTTTGGTTTTTGTTGAATATTGGGAATGGGGTTTTTCGTGGAAAGTTAAATGGGCTAAGTCATGTGAATGGGAAAATTGGAATGTTTTTGGTTTGTGTGGAGAGGGCTTGCTTGTTTAATTGCTTTTGCCTTTCCTCTCCTCTCCTCTTCTTATTTATTAAGCCTTCCCTTATTTGAAACTTTCCTCTTTATTTTATTTCAATACATTTCGTCAAAAC

mRNA sequence

ATGATACGAGTCAACGACAGAGTTGTGACGGTCGGAAGGGCCGGAAGGAGGAATCGGAACGCCTCTGGGAAGAAAGCTGAAGGTCTGGCCGACATATCGGAAGCCAGTCTTGTAATTGAAATAAGAATTCGACATGTCGGAATTATTCATCCCATGATGTTCCATCATTTTACCCGGCCGAGTTGCAGAGGAAAACCCAGAAAGAAGAAGAAGAAAGATGAAAATGGCGATGGGATTGAGTTTGCATTGGAAGAAAGAAGAAGAAGAAGGCATTGTGTGTTATGAAAGAACTAATTGCATGGGGAATTATTAATATAAAGGAGTATTTATAATAGGGAAATAAAAGGTCAACGGGGATTCTAATGTAAAGGACGTTAATTTCGCAGGATTGCGTTACAAAATTTCAAATATAATTTTGGTTTTTGTTGAATATTGGGAATGGGGTTTTTCGTGGAAAGTTAAATGGGCTAAGTCATGTGAATGGGAAAATTGGAATGTTTTTGGTTTGTGTGGAGAGGGCTTGCTTGTTTAATTGCTTTTGCCTTTCCTCTCCTCTCCTCTTCTTATTTATTAAGCCTTCCCTTATTTGAAACTTTCCTCTTTATTTTATTTCAATACATTTCGTCAAAAC

Coding sequence (CDS)

ATGATACGAGTCAACGACAGAGTTGTGACGGTCGGAAGGGCCGGAAGGAGGAATCGGAACGCCTCTGGGAAGAAAGCTGAAGGTCTGGCCGACATATCGGAAGCCAGTCTTGTAATTGAAATAAGAATTCGACATGTCGGAATTATTCATCCCATGATGTTCCATCATTTTACCCGGCCGAGTTGCAGAGGAAAACCCAGAAAGAAGAAGAAGAAAGATGAAAATGGCGATGGGATTGAGTTTGCATTGGAAGAAAGAAGAAGAAGAAGGCATTGTGTGTTATGA

Protein sequence

MIRVNDRVVTVGRAGRRNRNASGKKAEGLADISEASLVIEIRIRHVGIIHPMMFHHFTRPSCRGKPRKKKKKDENGDGIEFALEERRRRRHCVL

Homology

The following BLAST results are available for this feature:

BLAST of CcUC05G105420.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G105420.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G105420.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G105420.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G105420	CcUC05G105420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G105420.1-exon	CcUC05G105420.1-exon-CicolChr05:32906950..32907572	exon
CcUC05G105420.1-exon	CcUC05G105420.1-exon-CicolChr05:32907658..32907665	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G105420.1-three_prime_utr	CcUC05G105420.1-three_prime_utr-CicolChr05:32906950..32907295	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G105420.1-cds	CcUC05G105420.1-cds-CicolChr05:32907296..32907572	CDS
CcUC05G105420.1-cds	CcUC05G105420.1-cds-CicolChr05:32907658..32907665	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G105420.1	CcUC05G105420.1-protein	polypeptide