Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTATCAATCTCTTACTCTTCTTGCTCTTACGATCGCCGCTGTCGTCGGTACTATTGCTCAGGCTCCTTCTACCTCCCCCATGACCTCCCCAGCTCCAGTGCCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTTATCTCCATCTTTACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCCCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG
mRNA sequence
ATGGCCTATCAATCTCTTACTCTTCTTGCTCTTACGATCGCCGCTGTCGTCGGTACTATTGCTCAGGCTCCTTCTACCTCCCCCATGACCTCCCCAGCTCCAGTGCCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTTATCTCCATCTTTACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCCCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG
Coding sequence (CDS)
ATGGCCTATCAATCTCTTACTCTTCTTGCTCTTACGATCGCCGCTGTCGTCGGTACTATTGCTCAGGCTCCTTCTACCTCCCCCATGACCTCCCCAGCTCCAGTGCCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTTATCTCCATCTTTACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCCCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG
Protein sequence
MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPGSSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSRLFTNGFLGR
Homology
BLAST of CcUC05G095470.1 vs. NCBI nr
Match:
XP_038887448.1 (putative protein TPRXL [Benincasa hispida])
HSP 1 Score: 107.8 bits (268), Expect = 6.9e-20
Identity = 79/129 (61.24%), Postives = 87/129 (67.44%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL LLA+ I A+VG AQAPSTS TSPAP+ SSFDSTSSP +S SSP
Sbjct: 1 MAYQSLALLAVIIVAIVGAFAQAPSTSSTTSPAPMTSSFDSTSSPMTS-----FETSSPT 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFH-AQSPTTETAPISSPPAETS 120
SS S +TSPD+S YAPSISVAPAF DS + + AQSPT E AP SP ETS
Sbjct: 61 SSQDS--------STSPDLSTYAPSISVAPAFSSDSTSSNSAQSPTPEIAPTGSPSVETS 116
Query: 121 RLFTNGFLG 129
RLFTN F G
Sbjct: 121 RLFTNDFFG 116
BLAST of CcUC05G095470.1 vs. NCBI nr
Match:
XP_038887469.1 (classical arabinogalactan protein 6-like [Benincasa hispida])
HSP 1 Score: 104.8 bits (260), Expect = 5.8e-19
Identity = 78/129 (60.47%), Postives = 86/129 (66.67%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL LL + I A+VG AQAPSTSP TS AP+ SSFDSTSS +S SSP
Sbjct: 1 MAYQSLALLVVIIVAIVGAFAQAPSTSPTTSSAPMTSSFDSTSSLQTS-----FETSSPM 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFH-AQSPTTETAPISSPPAETS 120
SS S + SPD+S YAPSISVAPAF PDS + + AQSPT E AP SP A TS
Sbjct: 61 SSQDS--------SISPDLSTYAPSISVAPAFSPDSTSSNSAQSPTPEAAPTGSPTAGTS 116
Query: 121 RLFTNGFLG 129
RLFTNGF G
Sbjct: 121 RLFTNGFFG 116
BLAST of CcUC05G095470.1 vs. NCBI nr
Match:
KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])
HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 71/128 (55.47%), Postives = 80/128 (62.50%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL LLAL + AV G +AQAPSTSP +SP + SS DS++S +SS DS T +
Sbjct: 1 MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSSTSSSSSLDSTTTT----- 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
T TTS SA A SISVAPAF PDS AQSPTT T+P SP ETSR
Sbjct: 61 -----------TTTTS---SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSGETSR 106
Query: 121 LFTNGFLG 129
FTNGF G
Sbjct: 121 FFTNGFFG 106
BLAST of CcUC05G095470.1 vs. NCBI nr
Match:
XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])
HSP 1 Score: 91.3 bits (225), Expect = 6.7e-15
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL L L I A+ G +AQAPSTSP ++PA + SSFDS++S +SS DS T
Sbjct: 1 MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTT------- 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
TPTT+ S SIS+APAF PDS AQSPTT T+P S AETSR
Sbjct: 61 -----------TPTTTTTSSTDDSSISIAPAFSPDS---SAQSPTTATSPTGSTSAETSR 106
Query: 121 LFTNGFL 128
LF+NGFL
Sbjct: 121 LFSNGFL 106
BLAST of CcUC05G095470.1 vs. NCBI nr
Match:
KAA0056279.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])
HSP 1 Score: 85.5 bits (210), Expect = 3.7e-13
Identity = 69/128 (53.91%), Postives = 79/128 (61.72%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL LAL I AV G +AQAP+TSP ++PA + SS +S +SS DS T+
Sbjct: 1 MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSS----ASSSSSLDSTTI------ 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
PTT+ SA A SISVAPAF PDS AQSPTT T+P SP AETSR
Sbjct: 61 ------------PTTTIS-SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSAETSR 102
Query: 121 LFTNGFLG 129
LFTNGF G
Sbjct: 121 LFTNGFFG 102
BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match:
A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)
HSP 1 Score: 93.2 bits (230), Expect = 8.5e-16
Identity = 71/128 (55.47%), Postives = 80/128 (62.50%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL LLAL + AV G +AQAPSTSP +SP + SS DS++S +SS DS T +
Sbjct: 1 MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSSTSSSSSLDSTTTT----- 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
T TTS SA A SISVAPAF PDS AQSPTT T+P SP ETSR
Sbjct: 61 -----------TTTTS---SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSGETSR 106
Query: 121 LFTNGFLG 129
FTNGF G
Sbjct: 121 FFTNGFFG 106
BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match:
A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL L L I A+ G +AQAPSTSP ++PA + SSFDS++S +SS DS T
Sbjct: 1 MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTT------- 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
TPTT+ S SIS+APAF PDS AQSPTT T+P S AETSR
Sbjct: 61 -----------TPTTTTTSSTDDSSISIAPAFSPDS---SAQSPTTATSPTGSTSAETSR 106
Query: 121 LFTNGFL 128
LF+NGFL
Sbjct: 121 LFSNGFL 106
BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match:
A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 69/128 (53.91%), Postives = 79/128 (61.72%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL LAL I AV G +AQAP+TSP ++PA + SS +S +SS DS T+
Sbjct: 1 MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSS----ASSSSSLDSTTI------ 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
PTT+ SA A SISVAPAF PDS AQSPTT T+P SP AETSR
Sbjct: 61 ------------PTTTIS-SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSAETSR 102
Query: 121 LFTNGFLG 129
LFTNGF G
Sbjct: 121 LFTNGFFG 102
BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match:
A0A0A0LB81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 65/129 (50.39%), Postives = 78/129 (60.47%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFD-STSSPTSSPDSATVSASSP 60
MAYQSL LAL I AV G +AQ P++S +PAP SSFD ST S +SS DS T + ++
Sbjct: 1 MAYQSLAFLALIIVAVTGVVAQGPTSS---TPAPTTSSFDSSTPSSSSSLDSTTTTTTT- 60
Query: 61 GSSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETS 120
T ++S SA +PSISVAP PDS +AQSPTT +P S AETS
Sbjct: 61 ------------TTSSSSGSSADSPSISVAPGLAPDS---YAQSPTTAASPTGS-SAETS 109
Query: 121 RLFTNGFLG 129
R FTNGF G
Sbjct: 121 RFFTNGFFG 109
BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match:
A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = 0
Query: 1 MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
MAYQSL LAL I A+ G +AQ P++S +PAP T+S T +P +++ S+SS
Sbjct: 1 MAYQSLAFLALIIVAITGAVAQGPTSS---TPAP-------TTSSTPAPMTSSSSSSSSL 60
Query: 61 SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
ST + T TTS S +PSIS AP PDS AQSPTT T+P SP ETSR
Sbjct: 61 DSTTT------TTTTSSGSSIDSPSISAAPGLSPDS---SAQSPTTATSPSGSPSIETSR 109
Query: 121 LFTNGFLG 129
LF+NGF G
Sbjct: 121 LFSNGFFG 109
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038887448.1 | 6.9e-20 | 61.24 | putative protein TPRXL [Benincasa hispida] | [more] |
XP_038887469.1 | 5.8e-19 | 60.47 | classical arabinogalactan protein 6-like [Benincasa hispida] | [more] |
KAA0056285.1 | 1.8e-15 | 55.47 | cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro... | [more] |
XP_008450206.1 | 6.7e-15 | 52.76 | PREDICTED: cell wall protein DAN4-like [Cucumis melo] | [more] |
KAA0056279.1 | 3.7e-13 | 53.91 | cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall pro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C1H7 | 8.5e-16 | 55.47 | Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A1S3BPQ2 | 3.2e-15 | 52.76 | cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1 | [more] |
A0A5D3C1I1 | 1.8e-13 | 53.91 | Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A0A0LB81 | 2.4e-10 | 50.39 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1 | [more] |
A0A0A0L8Q5 | 1.2e-09 | 48.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |