CcUC05G095470.1 (mRNA) Watermelon (PI 537277) v1

Overview
NameCcUC05G095470.1
TypemRNA
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCell wall protein DAN4-like
LocationCicolChr05: 18243386 .. 18243775 (-)
Sequence length390
RNA-Seq ExpressionCcUC05G095470.1
SyntenyCcUC05G095470.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTATCAATCTCTTACTCTTCTTGCTCTTACGATCGCCGCTGTCGTCGGTACTATTGCTCAGGCTCCTTCTACCTCCCCCATGACCTCCCCAGCTCCAGTGCCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTTATCTCCATCTTTACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCCCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG

mRNA sequence

ATGGCCTATCAATCTCTTACTCTTCTTGCTCTTACGATCGCCGCTGTCGTCGGTACTATTGCTCAGGCTCCTTCTACCTCCCCCATGACCTCCCCAGCTCCAGTGCCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTTATCTCCATCTTTACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCCCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG

Coding sequence (CDS)

ATGGCCTATCAATCTCTTACTCTTCTTGCTCTTACGATCGCCGCTGTCGTCGGTACTATTGCTCAGGCTCCTTCTACCTCCCCCATGACCTCCCCAGCTCCAGTGCCCTCTTCATTTGATTCCACCTCTTCTCCGACGAGCTCACCAGATTCAGCAACGGTTTCCGCAAGCTCGCCAGGTTCATCTACCTTATCTCCATCTTTACTCGATGGAACTCCCACCACCTCGCCCGATGTCTCTGCCTATGCTCCGTCAATCTCTGTGGCTCCTGCATTCATGCCGGATTCCCCCAATTTCCACGCTCAGTCACCAACGACCGAGACAGCTCCAATTAGTTCTCCTCCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTCTTGGCCGATAG

Protein sequence

MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPGSSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSRLFTNGFLGR
Homology
BLAST of CcUC05G095470.1 vs. NCBI nr
Match: XP_038887448.1 (putative protein TPRXL [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 6.9e-20
Identity = 79/129 (61.24%), Postives = 87/129 (67.44%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LLA+ I A+VG  AQAPSTS  TSPAP+ SSFDSTSSP +S        SSP 
Sbjct: 1   MAYQSLALLAVIIVAIVGAFAQAPSTSSTTSPAPMTSSFDSTSSPMTS-----FETSSPT 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFH-AQSPTTETAPISSPPAETS 120
           SS  S        +TSPD+S YAPSISVAPAF  DS + + AQSPT E AP  SP  ETS
Sbjct: 61  SSQDS--------STSPDLSTYAPSISVAPAFSSDSTSSNSAQSPTPEIAPTGSPSVETS 116

Query: 121 RLFTNGFLG 129
           RLFTN F G
Sbjct: 121 RLFTNDFFG 116

BLAST of CcUC05G095470.1 vs. NCBI nr
Match: XP_038887469.1 (classical arabinogalactan protein 6-like [Benincasa hispida])

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-19
Identity = 78/129 (60.47%), Postives = 86/129 (66.67%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LL + I A+VG  AQAPSTSP TS AP+ SSFDSTSS  +S        SSP 
Sbjct: 1   MAYQSLALLVVIIVAIVGAFAQAPSTSPTTSSAPMTSSFDSTSSLQTS-----FETSSPM 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFH-AQSPTTETAPISSPPAETS 120
           SS  S        + SPD+S YAPSISVAPAF PDS + + AQSPT E AP  SP A TS
Sbjct: 61  SSQDS--------SISPDLSTYAPSISVAPAFSPDSTSSNSAQSPTPEAAPTGSPTAGTS 116

Query: 121 RLFTNGFLG 129
           RLFTNGF G
Sbjct: 121 RLFTNGFFG 116

BLAST of CcUC05G095470.1 vs. NCBI nr
Match: KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 71/128 (55.47%), Postives = 80/128 (62.50%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LLAL + AV G +AQAPSTSP +SP  + SS DS++S +SS DS T +     
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSSTSSSSSLDSTTTT----- 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
                      T TTS   SA A SISVAPAF PDS    AQSPTT T+P  SP  ETSR
Sbjct: 61  -----------TTTTS---SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSGETSR 106

Query: 121 LFTNGFLG 129
            FTNGF G
Sbjct: 121 FFTNGFFG 106

BLAST of CcUC05G095470.1 vs. NCBI nr
Match: XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-15
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  L L I A+ G +AQAPSTSP ++PA + SSFDS++S +SS DS T       
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTT------- 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
                      TPTT+   S    SIS+APAF PDS    AQSPTT T+P  S  AETSR
Sbjct: 61  -----------TPTTTTTSSTDDSSISIAPAFSPDS---SAQSPTTATSPTGSTSAETSR 106

Query: 121 LFTNGFL 128
           LF+NGFL
Sbjct: 121 LFSNGFL 106

BLAST of CcUC05G095470.1 vs. NCBI nr
Match: KAA0056279.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-13
Identity = 69/128 (53.91%), Postives = 79/128 (61.72%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  LAL I AV G +AQAP+TSP ++PA + SS    +S +SS DS T+      
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSS----ASSSSSLDSTTI------ 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
                       PTT+   SA A SISVAPAF PDS    AQSPTT T+P  SP AETSR
Sbjct: 61  ------------PTTTIS-SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSAETSR 102

Query: 121 LFTNGFLG 129
           LFTNGF G
Sbjct: 121 LFTNGFFG 102

BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match: A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.5e-16
Identity = 71/128 (55.47%), Postives = 80/128 (62.50%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL LLAL + AV G +AQAPSTSP +SP  + SS DS++S +SS DS T +     
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSSTSSSSSLDSTTTT----- 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
                      T TTS   SA A SISVAPAF PDS    AQSPTT T+P  SP  ETSR
Sbjct: 61  -----------TTTTS---SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSGETSR 106

Query: 121 LFTNGFLG 129
            FTNGF G
Sbjct: 121 FFTNGFFG 106

BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match: A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  L L I A+ G +AQAPSTSP ++PA + SSFDS++S +SS DS T       
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTT------- 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
                      TPTT+   S    SIS+APAF PDS    AQSPTT T+P  S  AETSR
Sbjct: 61  -----------TPTTTTTSSTDDSSISIAPAFSPDS---SAQSPTTATSPTGSTSAETSR 106

Query: 121 LFTNGFL 128
           LF+NGFL
Sbjct: 121 LFSNGFL 106

BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match: A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 69/128 (53.91%), Postives = 79/128 (61.72%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  LAL I AV G +AQAP+TSP ++PA + SS    +S +SS DS T+      
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSS----ASSSSSLDSTTI------ 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
                       PTT+   SA A SISVAPAF PDS    AQSPTT T+P  SP AETSR
Sbjct: 61  ------------PTTTIS-SADASSISVAPAFSPDS---SAQSPTTATSPTGSPSAETSR 102

Query: 121 LFTNGFLG 129
           LFTNGF G
Sbjct: 121 LFTNGFFG 102

BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match: A0A0A0LB81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 65/129 (50.39%), Postives = 78/129 (60.47%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFD-STSSPTSSPDSATVSASSP 60
           MAYQSL  LAL I AV G +AQ P++S   +PAP  SSFD ST S +SS DS T + ++ 
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSS---TPAPTTSSFDSSTPSSSSSLDSTTTTTTT- 60

Query: 61  GSSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETS 120
                       T ++S   SA +PSISVAP   PDS   +AQSPTT  +P  S  AETS
Sbjct: 61  ------------TTSSSSGSSADSPSISVAPGLAPDS---YAQSPTTAASPTGS-SAETS 109

Query: 121 RLFTNGFLG 129
           R FTNGF G
Sbjct: 121 RFFTNGFFG 109

BLAST of CcUC05G095470.1 vs. ExPASy TrEMBL
Match: A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = 0

Query: 1   MAYQSLTLLALTIAAVVGTIAQAPSTSPMTSPAPVPSSFDSTSSPTSSPDSATVSASSPG 60
           MAYQSL  LAL I A+ G +AQ P++S   +PAP       T+S T +P +++ S+SS  
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSS---TPAP-------TTSSTPAPMTSSSSSSSSL 60

Query: 61  SSTLSPSLLDGTPTTSPDVSAYAPSISVAPAFMPDSPNFHAQSPTTETAPISSPPAETSR 120
            ST +      T TTS   S  +PSIS AP   PDS    AQSPTT T+P  SP  ETSR
Sbjct: 61  DSTTT------TTTTSSGSSIDSPSISAAPGLSPDS---SAQSPTTATSPSGSPSIETSR 109

Query: 121 LFTNGFLG 129
           LF+NGF G
Sbjct: 121 LFSNGFFG 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887448.16.9e-2061.24putative protein TPRXL [Benincasa hispida][more]
XP_038887469.15.8e-1960.47classical arabinogalactan protein 6-like [Benincasa hispida][more]
KAA0056285.11.8e-1555.47cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro... [more]
XP_008450206.16.7e-1552.76PREDICTED: cell wall protein DAN4-like [Cucumis melo][more]
KAA0056279.13.7e-1353.91cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall pro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C1H78.5e-1655.47Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3BPQ23.2e-1552.76cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1[more]
A0A5D3C1I11.8e-1353.91Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A0A0LB812.4e-1050.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1[more]
A0A0A0L8Q51.2e-0948.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..120

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CcUC05G095470CcUC05G095470gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC05G095470.1-exonCcUC05G095470.1-exon-CicolChr05:18243386..18243775exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CcUC05G095470.1-cdsCcUC05G095470.1-cds-CicolChr05:18243386..18243775CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CcUC05G095470.1CcUC05G095470.1-proteinpolypeptide