Carg24611-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24611-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr03: 10242030 .. 10243654 (-)
Sequence length	266
RNA-Seq Expression	Carg24611-RA
Synteny	Carg24611-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTGTAAGTAATACTATTCTCTTTATAATTTCCCCTGCACTAGTTCTTTGAATTCCAGATGTTCTTAAAGCCATTAGACGCATTCGTGCATTTTATCTCATGGATGTTTTAATGAGACTTCAGTAAATTTTAACTACTTGAGAGGTTAGTTTAATTTTAGCTGCTTTATATCTAGAATCTCCTATTGCATAGAGGGTGTCTGCAATAACCTTCGCGTCCCTTTTCTTTCAGTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGGTTAAGCAACATTAAGAAATGGAGAGTCACGAGAGTAGTGTAGCGCAGGATGGTGATGCAGAACTATTATGTGTTGGTGACTTGCAGATGTAATCGGTTAAAGTAAATGTTTCCATGAGATTGACTAAAGTGTCTGATCTGAAGGCTACTTGTCACCCATTCATCTGGCTTGTGAGAAGGTGAGAATGGTTTCAATGATTTAGTAACAATGGTCGAAATTTGAGAACGTACGTTGGCCAAAACTTTGGTATGACTTGCTTTAATCTGGGATGTGTACTTAAATTTTTGTAATCATATGCAAGTGTGTGGGAACAGATCATGGCTTTAGAGGTAGTATGTGTTTTAAAAATCCCACAAACGCACGCGTTTAGGTGGGGCCTCTTGATTTATGTTTCTGTCGCTAGATTTTGAAAACTCATTCTTGTTTTATGTTTCTGTTGAAGCCACTTTGAACTCTGTCTTTTTTGGTCAACTTTAGGGACTTCTAAAAATTTAGAGAAGAGTTACTGATTTAAGTTCTATTTGTATCTATCCTTCTAAACTTCTAGGGATATGGCATACAATGGAATTGAAGGACAGACCAGTTCATAGAATCCTAGAAAAAAAAAGGTAATGAATACACAAAGATGTACAGCCATACCTCGTTCTCGTAAGCTCAAATATGGAGGAGTTACGCCATTTGACACCTAAAAAAAGATGGTTGGATTCGGTTACACTAATGTTGAGGGAACTCCACTTCAATATATGAACCTACGAAATGTCACATGTGCAAGTTCAGGTACTTAATGTGCACGTGCATTTGGCTGGGCCACATATTGCATAGGGATGACAGTTAACTGTACGTCACTATAGTATTGTCTTTTGTGAATCGGAATAGTATATTGCAGCTCATGTAGAAATTAGAAACTGAAGTGGTTATCAAAATTTATTAGTTTCAAGTTAAATCCCCTTCTTGCCCGAGTATTTATAATTCATATTCTTGATTATCGATGAAGTTGTTAATGTTTTGGTGGGGATAGAGAGTCAGTCAATTGGTTGTATTTATTAATATTTTCTAAATTTATTTCCTTCGACTTTGAGAGCCCAGCCATCCTTTTCAGAACAACTGTCTGATGGGGGCTTTTTTTTCAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAAATGTGAAGTTCAGATGAATTCTCAGTACCATTAAC

mRNA sequence

ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAAATGTGAAGTTCAGATGAATTCTCAGTACCATTAAC

Coding sequence (CDS)

ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAA

Protein sequence

MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHLSFSTGQAGDVQNGSLE

Homology

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BLAST of Carg24611-RA vs. NCBI nr
Match: KAG7034809.1 (hypothetical protein SDJN02_04541, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL 60
          MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL
Sbjct: 1  MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL 60

Query: 61 SFSTGQAGDVQNGSLE 77
          SFSTGQAGDVQNGSLE
Sbjct: 61 SFSTGQAGDVQNGSLE 76

The following BLAST results are available for this feature:

BLAST of Carg24611-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034809.1	3.1e-36	100.00	hypothetical protein SDJN02_04541, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg24611-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24611-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24611-RA vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24611	Carg24611	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24611-RA:3	Carg24611-RA:3	exon
Carg24611-RA:2	Carg24611-RA:2	exon
Carg24611-RA:1	Carg24611-RA:1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24611-RA:three_prime_utr	Carg24611-RA:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24611-RA:cds	Carg24611-RA:cds_3	CDS
Carg24611-RA:cds	Carg24611-RA:cds_2	CDS
Carg24611-RA:cds	Carg24611-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24611-RA	Carg24611-RA-protein	polypeptide