Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTGTAAGTAATACTATTCTCTTTATAATTTCCCCTGCACTAGTTCTTTGAATTCCAGATGTTCTTAAAGCCATTAGACGCATTCGTGCATTTTATCTCATGGATGTTTTAATGAGACTTCAGTAAATTTTAACTACTTGAGAGGTTAGTTTAATTTTAGCTGCTTTATATCTAGAATCTCCTATTGCATAGAGGGTGTCTGCAATAACCTTCGCGTCCCTTTTCTTTCAGTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGGTTAAGCAACATTAAGAAATGGAGAGTCACGAGAGTAGTGTAGCGCAGGATGGTGATGCAGAACTATTATGTGTTGGTGACTTGCAGATGTAATCGGTTAAAGTAAATGTTTCCATGAGATTGACTAAAGTGTCTGATCTGAAGGCTACTTGTCACCCATTCATCTGGCTTGTGAGAAGGTGAGAATGGTTTCAATGATTTAGTAACAATGGTCGAAATTTGAGAACGTACGTTGGCCAAAACTTTGGTATGACTTGCTTTAATCTGGGATGTGTACTTAAATTTTTGTAATCATATGCAAGTGTGTGGGAACAGATCATGGCTTTAGAGGTAGTATGTGTTTTAAAAATCCCACAAACGCACGCGTTTAGGTGGGGCCTCTTGATTTATGTTTCTGTCGCTAGATTTTGAAAACTCATTCTTGTTTTATGTTTCTGTTGAAGCCACTTTGAACTCTGTCTTTTTTGGTCAACTTTAGGGACTTCTAAAAATTTAGAGAAGAGTTACTGATTTAAGTTCTATTTGTATCTATCCTTCTAAACTTCTAGGGATATGGCATACAATGGAATTGAAGGACAGACCAGTTCATAGAATCCTAGAAAAAAAAAGGTAATGAATACACAAAGATGTACAGCCATACCTCGTTCTCGTAAGCTCAAATATGGAGGAGTTACGCCATTTGACACCTAAAAAAAGATGGTTGGATTCGGTTACACTAATGTTGAGGGAACTCCACTTCAATATATGAACCTACGAAATGTCACATGTGCAAGTTCAGGTACTTAATGTGCACGTGCATTTGGCTGGGCCACATATTGCATAGGGATGACAGTTAACTGTACGTCACTATAGTATTGTCTTTTGTGAATCGGAATAGTATATTGCAGCTCATGTAGAAATTAGAAACTGAAGTGGTTATCAAAATTTATTAGTTTCAAGTTAAATCCCCTTCTTGCCCGAGTATTTATAATTCATATTCTTGATTATCGATGAAGTTGTTAATGTTTTGGTGGGGATAGAGAGTCAGTCAATTGGTTGTATTTATTAATATTTTCTAAATTTATTTCCTTCGACTTTGAGAGCCCAGCCATCCTTTTCAGAACAACTGTCTGATGGGGGCTTTTTTTTCAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAAATGTGAAGTTCAGATGAATTCTCAGTACCATTAAC mRNA sequence ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAAATGTGAAGTTCAGATGAATTCTCAGTACCATTAAC Coding sequence (CDS) ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAA Protein sequence MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHLSFSTGQAGDVQNGSLE
Homology
BLAST of Carg24611-RA vs. NCBI nr
Match: KAG7034809.1 (hypothetical protein SDJN02_04541, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
Query: 1 MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL 60
MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL
Sbjct: 1 MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL 60
Query: 61 SFSTGQAGDVQNGSLE 77
SFSTGQAGDVQNGSLE
Sbjct: 61 SFSTGQAGDVQNGSLE 76
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7034809.1 | 3.1e-36 | 100.00 | hypothetical protein SDJN02_04541, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg24611 | Carg24611 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg24611-RA:3 | Carg24611-RA:3 | exon |
| Carg24611-RA:2 | Carg24611-RA:2 | exon |
| Carg24611-RA:1 | Carg24611-RA:1 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg24611-RA:three_prime_utr | Carg24611-RA:three_prime_utr | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg24611-RA:cds | Carg24611-RA:cds_3 | CDS |
| Carg24611-RA:cds | Carg24611-RA:cds_2 | CDS |
| Carg24611-RA:cds | Carg24611-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg24611-RA | Carg24611-RA-protein | polypeptide |
|
