Carg24611-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24611-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 10242030 .. 10243654 (-)
Sequence length266
RNA-Seq ExpressionCarg24611-RA
SyntenyCarg24611-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTGTAAGTAATACTATTCTCTTTATAATTTCCCCTGCACTAGTTCTTTGAATTCCAGATGTTCTTAAAGCCATTAGACGCATTCGTGCATTTTATCTCATGGATGTTTTAATGAGACTTCAGTAAATTTTAACTACTTGAGAGGTTAGTTTAATTTTAGCTGCTTTATATCTAGAATCTCCTATTGCATAGAGGGTGTCTGCAATAACCTTCGCGTCCCTTTTCTTTCAGTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGGTTAAGCAACATTAAGAAATGGAGAGTCACGAGAGTAGTGTAGCGCAGGATGGTGATGCAGAACTATTATGTGTTGGTGACTTGCAGATGTAATCGGTTAAAGTAAATGTTTCCATGAGATTGACTAAAGTGTCTGATCTGAAGGCTACTTGTCACCCATTCATCTGGCTTGTGAGAAGGTGAGAATGGTTTCAATGATTTAGTAACAATGGTCGAAATTTGAGAACGTACGTTGGCCAAAACTTTGGTATGACTTGCTTTAATCTGGGATGTGTACTTAAATTTTTGTAATCATATGCAAGTGTGTGGGAACAGATCATGGCTTTAGAGGTAGTATGTGTTTTAAAAATCCCACAAACGCACGCGTTTAGGTGGGGCCTCTTGATTTATGTTTCTGTCGCTAGATTTTGAAAACTCATTCTTGTTTTATGTTTCTGTTGAAGCCACTTTGAACTCTGTCTTTTTTGGTCAACTTTAGGGACTTCTAAAAATTTAGAGAAGAGTTACTGATTTAAGTTCTATTTGTATCTATCCTTCTAAACTTCTAGGGATATGGCATACAATGGAATTGAAGGACAGACCAGTTCATAGAATCCTAGAAAAAAAAAGGTAATGAATACACAAAGATGTACAGCCATACCTCGTTCTCGTAAGCTCAAATATGGAGGAGTTACGCCATTTGACACCTAAAAAAAGATGGTTGGATTCGGTTACACTAATGTTGAGGGAACTCCACTTCAATATATGAACCTACGAAATGTCACATGTGCAAGTTCAGGTACTTAATGTGCACGTGCATTTGGCTGGGCCACATATTGCATAGGGATGACAGTTAACTGTACGTCACTATAGTATTGTCTTTTGTGAATCGGAATAGTATATTGCAGCTCATGTAGAAATTAGAAACTGAAGTGGTTATCAAAATTTATTAGTTTCAAGTTAAATCCCCTTCTTGCCCGAGTATTTATAATTCATATTCTTGATTATCGATGAAGTTGTTAATGTTTTGGTGGGGATAGAGAGTCAGTCAATTGGTTGTATTTATTAATATTTTCTAAATTTATTTCCTTCGACTTTGAGAGCCCAGCCATCCTTTTCAGAACAACTGTCTGATGGGGGCTTTTTTTTCAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAAATGTGAAGTTCAGATGAATTCTCAGTACCATTAAC

mRNA sequence

ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAAATGTGAAGTTCAGATGAATTCTCAGTACCATTAAC

Coding sequence (CDS)

ATGATTAGACCTTTCTTTATTATTCGTGGAGATCAGGGACGACACCCTCCTGGATATTGGAACTCTCTCTTGGGCCGCGGTAACCTTTCTTCATTTGCGGATGAACATCTCTTGCTTCAGCACATCGATACTATTACTATTTCACAGACAAATTTTCTAGGCCTGATGGACCTTCATCTGTCATTTTCAACTGGTCAAGCTGGTGACGTGCAAAATGGTTCTCTGGAGTAA

Protein sequence

MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHLSFSTGQAGDVQNGSLE
Homology
[Close]
BLAST of Carg24611-RA vs. NCBI nr
Match: KAG7034809.1 (hypothetical protein SDJN02_04541, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL 60
          MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL
Sbjct: 1  MIRPFFIIRGDQGRHPPGYWNSLLGRGNLSSFADEHLLLQHIDTITISQTNFLGLMDLHL 60

Query: 61 SFSTGQAGDVQNGSLE 77
          SFSTGQAGDVQNGSLE
Sbjct: 61 SFSTGQAGDVQNGSLE 76

The following BLAST results are available for this feature:
BLAST of Carg24611-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034809.13.1e-36100.00hypothetical protein SDJN02_04541, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24611-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24611-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24611-RA vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg24611Carg24611gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24611-RA:3Carg24611-RA:3exon
Carg24611-RA:2Carg24611-RA:2exon
Carg24611-RA:1Carg24611-RA:1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24611-RA:three_prime_utrCarg24611-RA:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg24611-RA:cdsCarg24611-RA:cds_3CDS
Carg24611-RA:cdsCarg24611-RA:cds_2CDS
Carg24611-RA:cdsCarg24611-RA:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg24611-RACarg24611-RA-proteinpolypeptide