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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGTTCCTGCGTTTAGGGTTTTTCATTTTCTTTTGTTTAACATTTTCTTAAGCGTTCAGCTCAGGTGGGTTCGCTTTGGGCCGGGGAGTTGAAGATCAGGGCCGCTGTATCTATAGCCCAAACTGGCCACTCTCCCCATTTTCTCAACATCAATTTCTTCCTCATTGATTTAAAGAGGTTCATTCGTCACTATTGACTAGTGTAAAATCCCAAGGAAATATATATATTGGAATGAAATAAGTGGCGAGTTTTATGTCGCATCGTCGGTTGGGAAGGAGAACGAAACATCCTTTATAAGGGGTAGCAACCTTTCTCCAAGCAGTGGATCTCGACCATTACATTTGGTATCAGACTGGGTGATGTGCCAATAGGGAGGCTCTTCCCCAAAAGGGTAACACGAGGCGATGTGTCAGTAAAGACGTTGGGCCCCAAAAGAGGTGGATTAAGTGAGAAAAATGAACGAGCGCCCGTATAGACTTGGATCCTGTTGAATCCTGAAAGAGGTGGATTTAAGCCCACGGAATGTTTGAATGGATGAGTTTTGTTTAAGATAATATTTTGGGCGTGGGTGGCTATGTTAGGCGTTGGCCCCATTGGCAAATGAGTTTTAGTATCCAGTGATGGAGTCAAATTCAGCGGCCGGTGTGATCGAAATGGGTCAACTAGCCAGCTTGCGTTCGTTCTCCAATCCCTTCTTTTAGATGCGATCTTGGGTTAAACATATAAAAAATTGGACAAATCCCTTTAAATCCGAACTGGAAAACAAATTGTTTCATTAGGGTTGGATTATGACTCCAGCGAGTCACAGCTCCAGATTTAATGCTGGGAACTTTGACAGTATGAGAGCCTTCAATTTATTAATCATAAATATAATTCTTTTCTAAATAAGCTATACAAAAGAAAAAAAAAAAAAAAAAAAAGAGAGAAGAAAGATCTAAGCTGATTTCCTGGAAGGGTCAGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGGTATGCATCTGTCTTCAAGGCTTTGTATTAACATAATTAGATTAGCTTTGATCAATAATTTAAGGGTTGTGTAGTGGTTTTGATGAATGAAGTATGAGATTTGGTGGAGGGGTTGCCGCAACTTGAAAAGGGGCTGTTCAGGTTAGATTGAGAAGAAGCAAATCGAAGAGGGGGTATATTTTTTAGTCTCTCTTACATTTTGTCCTCTGTTTTTGGTTATAAGCATTAACTTGTACTTATTTATATCCATTGGTAATCAGATCATCGAAAGTGGGGTTTGCCAGTTTTGAAGTGTTGTGTTGAATGCTGCAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA mRNA sequence ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA Coding sequence (CDS) ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA Protein sequence MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPKKRLQARGSKVVLAV
Homology
BLAST of Carg10776-RA vs. NCBI nr
Match: KAG7030514.1 (hypothetical protein SDJN02_08862, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 180.3 bits (456), Expect = 7.4e-42 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
Query: 1 MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV 60
MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV
Sbjct: 1 MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV 60
Query: 61 IPSSHSYSYRRPKKRLQARGSKVVLAV 88
IPSSHSYSYRRPKKRLQARGSKVVLAV
Sbjct: 61 IPSSHSYSYRRPKKRLQARGSKVVLAV 87
BLAST of Carg10776-RA vs. NCBI nr
Match: KAG6599535.1 (O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 117.1 bits (292), Expect = 7.7e-23 Identity = 64/101 (63.37%), Postives = 65/101 (64.36%), Query Frame = 0
Query: 1 MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDL--------------------------- 60
MCSPEDDTAKPRTKSRWEKAAN G +L
Sbjct: 1 MCSPEDDTAKPRTKSRWEKAANPQVGSLWAGELKIRAAVSIAQTGHSPHFLNINFFLIDL 60
Query: 61 -SPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK 74
SPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK
Sbjct: 61 KSPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK 101
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7030514.1 | 7.4e-42 | 100.00 | hypothetical protein SDJN02_08862, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6599535.1 | 7.7e-23 | 63.37 | O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..48 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..87 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 7..25 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg10776 | Carg10776 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg10776-RA:3 | Carg10776-RA:3 | exon |
| Carg10776-RA:2 | Carg10776-RA:2 | exon |
| Carg10776-RA:1 | Carg10776-RA:1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg10776-RA:cds | Carg10776-RA:cds_3 | CDS |
| Carg10776-RA:cds | Carg10776-RA:cds_2 | CDS |
| Carg10776-RA:cds | Carg10776-RA:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg10776-RA | Carg10776-RA-protein | polypeptide |
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