Carg10776 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10776
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 12117265 .. 12118798 (-)
RNA-Seq ExpressionCarg10776
SyntenyCarg10776
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGTTCCTGCGTTTAGGGTTTTTCATTTTCTTTTGTTTAACATTTTCTTAAGCGTTCAGCTCAGGTGGGTTCGCTTTGGGCCGGGGAGTTGAAGATCAGGGCCGCTGTATCTATAGCCCAAACTGGCCACTCTCCCCATTTTCTCAACATCAATTTCTTCCTCATTGATTTAAAGAGGTTCATTCGTCACTATTGACTAGTGTAAAATCCCAAGGAAATATATATATTGGAATGAAATAAGTGGCGAGTTTTATGTCGCATCGTCGGTTGGGAAGGAGAACGAAACATCCTTTATAAGGGGTAGCAACCTTTCTCCAAGCAGTGGATCTCGACCATTACATTTGGTATCAGACTGGGTGATGTGCCAATAGGGAGGCTCTTCCCCAAAAGGGTAACACGAGGCGATGTGTCAGTAAAGACGTTGGGCCCCAAAAGAGGTGGATTAAGTGAGAAAAATGAACGAGCGCCCGTATAGACTTGGATCCTGTTGAATCCTGAAAGAGGTGGATTTAAGCCCACGGAATGTTTGAATGGATGAGTTTTGTTTAAGATAATATTTTGGGCGTGGGTGGCTATGTTAGGCGTTGGCCCCATTGGCAAATGAGTTTTAGTATCCAGTGATGGAGTCAAATTCAGCGGCCGGTGTGATCGAAATGGGTCAACTAGCCAGCTTGCGTTCGTTCTCCAATCCCTTCTTTTAGATGCGATCTTGGGTTAAACATATAAAAAATTGGACAAATCCCTTTAAATCCGAACTGGAAAACAAATTGTTTCATTAGGGTTGGATTATGACTCCAGCGAGTCACAGCTCCAGATTTAATGCTGGGAACTTTGACAGTATGAGAGCCTTCAATTTATTAATCATAAATATAATTCTTTTCTAAATAAGCTATACAAAAGAAAAAAAAAAAAAAAAAAAAGAGAGAAGAAAGATCTAAGCTGATTTCCTGGAAGGGTCAGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGGTATGCATCTGTCTTCAAGGCTTTGTATTAACATAATTAGATTAGCTTTGATCAATAATTTAAGGGTTGTGTAGTGGTTTTGATGAATGAAGTATGAGATTTGGTGGAGGGGTTGCCGCAACTTGAAAAGGGGCTGTTCAGGTTAGATTGAGAAGAAGCAAATCGAAGAGGGGGTATATTTTTTAGTCTCTCTTACATTTTGTCCTCTGTTTTTGGTTATAAGCATTAACTTGTACTTATTTATATCCATTGGTAATCAGATCATCGAAAGTGGGGTTTGCCAGTTTTGAAGTGTTGTGTTGAATGCTGCAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA

mRNA sequence

ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA

Coding sequence (CDS)

ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA

Protein sequence

MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPKKRLQARGSKVVLAV
Homology
[Close]
BLAST of Carg10776 vs. NCBI nr
Match: KAG7030514.1 (hypothetical protein SDJN02_08862, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 7.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV 60
          MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV
Sbjct: 1  MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV 60

Query: 61 IPSSHSYSYRRPKKRLQARGSKVVLAV 88
          IPSSHSYSYRRPKKRLQARGSKVVLAV
Sbjct: 61 IPSSHSYSYRRPKKRLQARGSKVVLAV 87

[Close]
BLAST of Carg10776 vs. NCBI nr
Match: KAG6599535.1 (O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 7.7e-23
Identity = 64/101 (63.37%), Postives = 65/101 (64.36%), Query Frame = 0 

Query: 1   MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDL--------------------------- 60
           MCSPEDDTAKPRTKSRWEKAAN   G     +L                           
Sbjct: 1   MCSPEDDTAKPRTKSRWEKAANPQVGSLWAGELKIRAAVSIAQTGHSPHFLNINFFLIDL 60

Query: 61  -SPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK 74
            SPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK
Sbjct: 61  KSPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK 101

The following BLAST results are available for this feature:
BLAST of Carg10776 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030514.17.4e-42100.00hypothetical protein SDJN02_08862, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6599535.17.7e-2363.37O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg10776 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10776 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10776 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10776-RACarg10776-RAmRNA