Carg10776-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10776-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr05: 12117265 .. 12118798 (-)
Sequence length	264
RNA-Seq Expression	Carg10776-RA
Synteny	Carg10776-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGTTCCTGCGTTTAGGGTTTTTCATTTTCTTTTGTTTAACATTTTCTTAAGCGTTCAGCTCAGGTGGGTTCGCTTTGGGCCGGGGAGTTGAAGATCAGGGCCGCTGTATCTATAGCCCAAACTGGCCACTCTCCCCATTTTCTCAACATCAATTTCTTCCTCATTGATTTAAAGAGGTTCATTCGTCACTATTGACTAGTGTAAAATCCCAAGGAAATATATATATTGGAATGAAATAAGTGGCGAGTTTTATGTCGCATCGTCGGTTGGGAAGGAGAACGAAACATCCTTTATAAGGGGTAGCAACCTTTCTCCAAGCAGTGGATCTCGACCATTACATTTGGTATCAGACTGGGTGATGTGCCAATAGGGAGGCTCTTCCCCAAAAGGGTAACACGAGGCGATGTGTCAGTAAAGACGTTGGGCCCCAAAAGAGGTGGATTAAGTGAGAAAAATGAACGAGCGCCCGTATAGACTTGGATCCTGTTGAATCCTGAAAGAGGTGGATTTAAGCCCACGGAATGTTTGAATGGATGAGTTTTGTTTAAGATAATATTTTGGGCGTGGGTGGCTATGTTAGGCGTTGGCCCCATTGGCAAATGAGTTTTAGTATCCAGTGATGGAGTCAAATTCAGCGGCCGGTGTGATCGAAATGGGTCAACTAGCCAGCTTGCGTTCGTTCTCCAATCCCTTCTTTTAGATGCGATCTTGGGTTAAACATATAAAAAATTGGACAAATCCCTTTAAATCCGAACTGGAAAACAAATTGTTTCATTAGGGTTGGATTATGACTCCAGCGAGTCACAGCTCCAGATTTAATGCTGGGAACTTTGACAGTATGAGAGCCTTCAATTTATTAATCATAAATATAATTCTTTTCTAAATAAGCTATACAAAAGAAAAAAAAAAAAAAAAAAAAGAGAGAAGAAAGATCTAAGCTGATTTCCTGGAAGGGTCAGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGGTATGCATCTGTCTTCAAGGCTTTGTATTAACATAATTAGATTAGCTTTGATCAATAATTTAAGGGTTGTGTAGTGGTTTTGATGAATGAAGTATGAGATTTGGTGGAGGGGTTGCCGCAACTTGAAAAGGGGCTGTTCAGGTTAGATTGAGAAGAAGCAAATCGAAGAGGGGGTATATTTTTTAGTCTCTCTTACATTTTGTCCTCTGTTTTTGGTTATAAGCATTAACTTGTACTTATTTATATCCATTGGTAATCAGATCATCGAAAGTGGGGTTTGCCAGTTTTGAAGTGTTGTGTTGAATGCTGCAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA

mRNA sequence

ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA

Coding sequence (CDS)

ATGTGCAGCCCTGAAGATGATACAGCAAAACCTCGAACAAAATCTCGATGGGAGAAAGCTGCTAATCGTATGAATGGACGACATCCGGGGTCTGACCTCAGTCCATTTCCTCAGACCCCACTCTCCAAAATCCATACTGGGCATCCTCCATTAGTGCTCCTAAACCATTCTCTCTCTGTGATCCCTTCGTCTCATTCGTACTCTTATCGCCGACCCAAGAAGAGACTGCAAGCAAGAGGCTCCAAAGTCGTTCTTGCTGTTTGA

Protein sequence

MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPKKRLQARGSKVVLAV

Homology

[Close]

BLAST of Carg10776-RA vs. NCBI nr
Match: KAG7030514.1 (hypothetical protein SDJN02_08862, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 7.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV 60
          MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV
Sbjct: 1  MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDLSPFPQTPLSKIHTGHPPLVLLNHSLSV 60

Query: 61 IPSSHSYSYRRPKKRLQARGSKVVLAV 88
          IPSSHSYSYRRPKKRLQARGSKVVLAV
Sbjct: 61 IPSSHSYSYRRPKKRLQARGSKVVLAV 87

[Close]

BLAST of Carg10776-RA vs. NCBI nr
Match: KAG6599535.1 (O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 7.7e-23
Identity = 64/101 (63.37%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 1   MCSPEDDTAKPRTKSRWEKAANRMNGRHPGSDL--------------------------- 60
           MCSPEDDTAKPRTKSRWEKAAN   G     +L                           
Sbjct: 1   MCSPEDDTAKPRTKSRWEKAANPQVGSLWAGELKIRAAVSIAQTGHSPHFLNINFFLIDL 60

Query: 61  -SPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK 74
            SPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK
Sbjct: 61  KSPFPQTPLSKIHTGHPPLVLLNHSLSVIPSSHSYSYRRPK 101

The following BLAST results are available for this feature:

BLAST of Carg10776-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030514.1	7.4e-42	100.00	hypothetical protein SDJN02_08862, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599535.1	7.7e-23	63.37	O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg10776-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10776-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10776-RA vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10776	Carg10776	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10776-RA:3	Carg10776-RA:3	exon
Carg10776-RA:2	Carg10776-RA:2	exon
Carg10776-RA:1	Carg10776-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10776-RA:cds	Carg10776-RA:cds_3	CDS
Carg10776-RA:cds	Carg10776-RA:cds_2	CDS
Carg10776-RA:cds	Carg10776-RA:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10776-RA	Carg10776-RA-protein	polypeptide