CSPI03G45720.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI03G45720.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Location	Chr3: 39135854 .. 39136162 (+)
Sequence length	309
RNA-Seq Expression	CSPI03G45720.1
Synteny	CSPI03G45720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGCAGAGAAACAAAAAAACAAAGAAGAAACAATGTCATGTTGGGAGCGTTTGAGGATGAAGATTTTGTCGAGAAAAAAAGAGGGAAATATCAACAACAAGAATGATACTAATATTACGTGCATGGGAGGTGAGACAAGTGGATTGAATAATCGGAGTGGGGGATTATTCAAGTATGACGCACTAAGCTACGCTAAAAATTTCGACGAGGGGTTGGCTAATGCTGACGGAGAAGGATCCTTTCGAAGTTTTTCTGCAAGATACGCTGTTCCTTCCAAACCCCCAGCTAAGAAGTTAGGATAA

mRNA sequence

ATGAAGAAAGCAGAGAAACAAAAAAACAAAGAAGAAACAATGTCATGTTGGGAGCGTTTGAGGATGAAGATTTTGTCGAGAAAAAAAGAGGGAAATATCAACAACAAGAATGATACTAATATTACGTGCATGGGAGGTGAGACAAGTGGATTGAATAATCGGAGTGGGGGATTATTCAAGTATGACGCACTAAGCTACGCTAAAAATTTCGACGAGGGGTTGGCTAATGCTGACGGAGAAGGATCCTTTCGAAGTTTTTCTGCAAGATACGCTGTTCCTTCCAAACCCCCAGCTAAGAAGTTAGGATAA

Coding sequence (CDS)

ATGAAGAAAGCAGAGAAACAAAAAAACAAAGAAGAAACAATGTCATGTTGGGAGCGTTTGAGGATGAAGATTTTGTCGAGAAAAAAAGAGGGAAATATCAACAACAAGAATGATACTAATATTACGTGCATGGGAGGTGAGACAAGTGGATTGAATAATCGGAGTGGGGGATTATTCAAGTATGACGCACTAAGCTACGCTAAAAATTTCGACGAGGGGTTGGCTAATGCTGACGGAGAAGGATCCTTTCGAAGTTTTTCTGCAAGATACGCTGTTCCTTCCAAACCCCCAGCTAAGAAGTTAGGATAA

Protein sequence

MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKLG*

Homology

[Close]

BLAST of CSPI03G45720.1 vs. ExPASy TrEMBL
Match: A0A0A0LJR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.7e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60
           MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK
Sbjct: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60

Query: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKLG 103
           YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKLG
Sbjct: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKLG 102

[Close]

BLAST of CSPI03G45720.1 vs. ExPASy TrEMBL
Match: A0A1R3GHI4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35304 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.3e-06
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6  KQKNKEETMSCWERLRMKI-LSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 65
          K  N+E ++SCW RL++K+  ++++  N+ N        +       N +  G F+YD L
Sbjct: 8  KNTNEEGSLSCWGRLKLKLPCTKRRMRNLGN-------TITAPFKAKNPKPAGGFRYDPL 67

Query: 66 SYAKNFDEGLANADGEGS-FRSFSARYAVPS 95
          SYA+NFD+G  + D EGS +R FS+RYA PS
Sbjct: 68 SYAQNFDDGCLDDDIEGSLYRGFSSRYAAPS 91

[Close]

BLAST of CSPI03G45720.1 vs. ExPASy TrEMBL
Match: A0A1R3FYB4 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_30223 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 6  KQKNKEETMSCWERLRMKI-LSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 65
          K  N+E  +SCW RL++K+  ++++  N+ N        +       N +  G F+YD L
Sbjct: 8  KNTNEEGLLSCWGRLKLKLPCTKRRMRNLGN-------TITAPFKAKNPKPAGGFRYDPL 67

Query: 66 SYAKNFDEGLANADGEGS-FRSFSARYAVPS 95
          SYA+NFD+G  + D EGS +R FS+RYA PS
Sbjct: 68 SYAQNFDDGCLDDDIEGSLYRGFSSRYAAPS 91

[Close]

BLAST of CSPI03G45720.1 vs. ExPASy TrEMBL
Match: A0A059BR02 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02166 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 3   KAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDT---NITCMGGET--SGLNNRSGG 62
           + E   NK    SCW RL++K+   ++ G    ++ +   N+ C    T  S    +  G
Sbjct: 2   ETETISNKSLLFSCWGRLKLKLPWPRRGGADRRRHKSLTANLDCKSIATTLSVPQPKPVG 61

Query: 63  LFKYDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPP 98
            F+YD LSY++NFD+G   ADG+   R FS RYA P  PP
Sbjct: 62  GFRYDPLSYSQNFDDGCWRADGDAPSRGFSTRYAAPPPPP 101

[Close]

BLAST of CSPI03G45720.1 vs. ExPASy TrEMBL
Match: A0A7J8Y1V8 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_003904 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.4e-05
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 9  NKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGL----NNRSGGLFKYDAL 68
          N+E+ +SCW RL++K+   K++          I  +G   +        R  G FKYD L
Sbjct: 11 NEEQLLSCWGRLKLKLPWTKRK----------IRSLGHSITAAFRAKRPRPAGGFKYDPL 70

Query: 69 SYAKNFDEGLANADGEGS-FRSFSARYAVPS 95
          SYA+NFD+G  + D EG+ +  FS+RYA PS
Sbjct: 71 SYAQNFDDGYGDDDPEGALYHGFSSRYAAPS 91

[Close]

BLAST of CSPI03G45720.1 vs. NCBI nr
Match: KGN60281.1 (hypothetical protein Csa_002688 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 9.6e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60
           MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK
Sbjct: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60

Query: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKLG 103
           YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKLG
Sbjct: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKKLG 102

[Close]

BLAST of CSPI03G45720.1 vs. NCBI nr
Match: KAG7024589.1 (hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-12
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 5   EKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 64
           EK+K+K ET S W+ L+ KI S KKEG   +KN+                  G F YDA+
Sbjct: 7   EKKKSK-ETTSIWKCLKSKISSGKKEGT-TSKNE-----------------HGKFSYDAV 66

Query: 65  SYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKK 101
           SYA+NFD+GLANAD EGS RSFSARYAV SKPP KK
Sbjct: 67  SYAQNFDDGLANADDEGSSRSFSARYAVASKPPPKK 83

[Close]

BLAST of CSPI03G45720.1 vs. NCBI nr
Match: KAG6591707.1 (hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 5   EKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 64
           EK+K+K ETMS W+ L+ KI S KKEG   +KN+                  G F YDA+
Sbjct: 7   EKKKSK-ETMSIWKCLKSKI-SGKKEGT-TSKNE-----------------HGKFSYDAV 66

Query: 65  SYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKK 101
           SYA+NFD+GL NAD EGS RSFSARYAV SKPP KK
Sbjct: 67  SYAQNFDDGLGNADDEGSSRSFSARYAVASKPPPKK 82

[Close]

BLAST of CSPI03G45720.1 vs. NCBI nr
Match: KAG6608120.1 (hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1   MKKAEKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFK 60
           M+K+E QK+ EE +SCW RL++K+L  K+EG        N  C+ G+T  LN    G F+
Sbjct: 1   MEKSEGQKSSEELVSCWGRLKLKLLLMKREG--------NNPCI-GDTKPLN----GGFR 60

Query: 61  YDALSYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAK 100
           YDALSYA+NFDEGL + D E   R FSARY   SKP  K
Sbjct: 61  YDALSYAQNFDEGLDDEDEELRCRGFSARYVSASKPLPK 86

[Close]

BLAST of CSPI03G45720.1 vs. NCBI nr
Match: KAG2698660.1 (hypothetical protein I3760_07G160100 [Carya illinoinensis] >KAG6705100.1 hypothetical protein I3842_07G165100 [Carya illinoinensis])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 10  KEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDALSYAKN 69
           KE  +SCW RL++K+   ++     N             S +  + GG FKYD LSYA+N
Sbjct: 3   KEGLLSCWGRLKLKLPWTQQRVRSPNTR-----------SRVVGKLGGRFKYDPLSYAQN 62

Query: 70  FDEGLANADGEGSFRSFSARYAVP-SKPPAKK 101
           FDEG  + D E   R FSARYA P SKPP  K
Sbjct: 63  FDEGWDDDDEEVYQRGFSARYAAPSSKPPGDK 83

[Close]

BLAST of CSPI03G45720.1 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 9.1e-05
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 43  CMGGETSGLNNRSG--GLFKYDALSYAKNFDEG--LANADGEGSFRSFSARYAVPSKPPA 101
           C GG    + NRS   G F+YD LSY+ NFD+G    + D E  +R +S R+A PS P +
Sbjct: 110 CGGG---AMPNRSSDQGKFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAAPSLPVS 168

[Close]

BLAST of CSPI03G45720.1 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 14  MSCWERLR--MKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDALSYAKNFD 73
           +S W ++R   +I++  K      +   N  C GG   G N      F+YD+ SY+ NFD
Sbjct: 648 VSGWMKMREWSEIVAGPKWKTFIRRFGRNHCCNGGIDGGCNRPEHVSFRYDSWSYSLNFD 707

Query: 74  EG--LANADGEGSFRSFSARYAVPSKPPAKK 101
           +G    + + E  +R +S R+A PS P + K
Sbjct: 708 DGKQTGHFEDEFPYRDYSMRFAAPSLPVSTK 738

The following BLAST results are available for this feature:

BLAST of CSPI03G45720.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G45720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJR5	4.7e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1	[more]
A0A1R3GHI4	8.3e-06	39.56	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35304 PE=4 SV=1	[more]
A0A1R3FYB4	1.4e-05	39.56	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_30223 PE=4 ...	[more]
A0A059BR02	4.1e-05	37.00	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02166 PE=4 SV...	[more]
A0A7J8Y1V8	5.4e-05	38.46	Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_003904 PE=4 SV=1	[more]

BLAST of CSPI03G45720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60281.1	9.6e-49	100.00	hypothetical protein Csa_002688 [Cucumis sativus]	[more]
KAG7024589.1	1.9e-12	55.21	hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591707.1	2.1e-11	55.21	hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6608120.1	2.1e-11	50.51	hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG2698660.1	1.7e-05	43.48	hypothetical protein I3760_07G160100 [Carya illinoinensis] >KAG6705100.1 hypothe...	[more]

BLAST of CSPI03G45720.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01430.1	9.1e-05	43.55	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:...	[more]
AT5G14890.1	2.0e-04	31.87	NHL domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF46	NHL DOMAIN PROTEIN	coord: 6..100
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 6..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G45720	CSPI03G45720	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G45720.1.cds1	CSPI03G45720.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G45720.1	CSPI03G45720.1-protein	polypeptide