Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGAGGTTACCACCTGGAGTATATGATGTCGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGTGTCTACCATTTGAATATGAATGGAGACCGCCATTCACGATCTAATTCACTTAGCAGCTATTCTTGTGCATCTCCCACGACATCTGATGTTGCTGCTTGGCAAGGAATCTATGGCACAACTCATTCATTCACGTGTGCTCTTCAGGTGATGGTTCTCTTCTTTGTTTCTTTTTAGGTATCAACATCTAGAAATACAGTGATTTTTGTCTCTTTGGTGTTACTTGCAATTTGACTAGTTTCTGATTTAATTATTGAGTGAGAATATGCAATCCATGTGCTGAAGCTCCCTTGTTTGTAACATAAATTTTATTTGGGCTCTATAAATTTTTTAAAAATGGCCTCCATGATATCTCGAACATGCACTGTAGAACATTTTTGTACAAACTTGAATAACACTAATTTTTGTCTATTTTTTTACAATTATAATGCCCATAATGGTAAAATTGGATGGTCTTTTTGTGTTAGTTAGTTCCTCCTTGGGAGAGAGTTTGCTCTACCTCTACCCTTGGTTGCCCTCTTCTGTGGCTTTAATATACTCCTTAAAAGTTCAATTAAAAAAAAAAAAAAGAATTGTAGTGCAGGGACACTCTTAGGCAAAATTTTCTTCAAAAATTACTCTAAACTATGTAGCTCGCGGTTTTGGGCATCTAACACTTAGTGTTGGAATCTGAAGTAGAGTATAAGAAGCTCAAATGCGATGTTCTTATAATGTGTATTATAATTGCATTTACAGTCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATATGAGAGATATAACGTTCGGAGATCAGACAAGTCTTCAGTTTCGGGACTAA
mRNA sequence
ATGGCTGAGAGGTTACCACCTGGAGTATATGATGTCGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGTGTCTACCATTTGAATATGAATGGAGACCGCCATTCACGATCTAATTCACTTAGCAGCTATTCTTGTGCATCTCCCACGACATCTGATGTTGCTGCTTGGCAAGGAATCTATGGCACAACTCATTCATTCACGTTCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATATGAGAGATATAACGTTCGGAGATCAGACAAGTCTTCAGTTTCGGGACTAA
Coding sequence (CDS)
ATGGCTGAGAGGTTACCACCTGGAGTATATGATGTCGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGTGTCTACCATTTGAATATGAATGGAGACCGCCATTCACGATCTAATTCACTTAGCAGCTATTCTTGTGCATCTCCCACGACATCTGATGTTGCTGCTTGGCAAGGAATCTATGGCACAACTCATTCATTCACGTTCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATATGAGAGATATAACGTTCGGAGATCAGACAAGTCTTCAGTTTCGGGACTAA
Protein sequence
MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAAWQGIYGTTHSFTFGEDLESIKQKIGGQRTVRRYMRDITFGDQTSLQFRD
Homology
BLAST of Tan0020891 vs. NCBI nr
Match:
KAG6578904.1 (PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAAA 955
Query: 61 WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
W G YGT HS DL + + I Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979
BLAST of Tan0020891 vs. NCBI nr
Match:
XP_023551654.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAAA 955
Query: 61 WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
W G YGT HS DL + + I Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979
BLAST of Tan0020891 vs. NCBI nr
Match:
KAG7016426.1 (putative E3 ubiquitin-protein ligase HERC1 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD A
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAAV 955
Query: 61 WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
W G YGT HS DL + + I Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979
BLAST of Tan0020891 vs. NCBI nr
Match:
XP_022993843.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima])
HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGVYHL++NG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSVNGERHSRSDSLSSYSCASPTASDAAA 955
Query: 61 WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
W G YGT HS DL + + I Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979
BLAST of Tan0020891 vs. NCBI nr
Match:
XP_022938703.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata])
HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD A
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAVA 955
Query: 61 WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
W G YGT HS DL + + I Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979
BLAST of Tan0020891 vs. ExPASy TrEMBL
Match:
A0A6J1K3G5 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489730 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGVYHL++NG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSVNGERHSRSDSLSSYSCASPTASDAAA 955
Query: 61 WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
W G YGT HS DL + + I Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979
BLAST of Tan0020891 vs. ExPASy TrEMBL
Match:
A0A6J1FJN1 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444850 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD A
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAVA 955
Query: 61 WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
W G YGT HS DL + + I Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979
BLAST of Tan0020891 vs. ExPASy TrEMBL
Match:
A0A6J1JR98 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486854 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNGV HLNMNG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 898 MAERLPPGVYDAEKMRSVHLSNGLESNGVNHLNMNGERHSRSDSLSSYSCASPTASDAAA 957
Query: 61 WQGIYGTTHS 71
WQG YG HS
Sbjct: 958 WQGSYGAAHS 967
BLAST of Tan0020891 vs. ExPASy TrEMBL
Match:
A0A0A0KI75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338030 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRS+HLSNGLESNG YHL+MNG+RHSRS+S+SSYSCASPT S+ AA
Sbjct: 898 MAERLPPGVYDAEKMRSLHLSNGLESNGGYHLSMNGERHSRSDSVSSYSCASPTASEAAA 957
Query: 61 WQGIYGTTHSF 72
WQG YGTTHS+
Sbjct: 958 WQGSYGTTHSY 968
BLAST of Tan0020891 vs. ExPASy TrEMBL
Match:
A0A6J1CJU4 (uncharacterized protein LOC111011834 OS=Momordica charantia OX=3673 GN=LOC111011834 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
MAERLPPGVYD EKMRSVHLSNGLESNG+YHLNMNG+RHSRS+SL+SYSCASPT SD AA
Sbjct: 898 MAERLPPGVYDAEKMRSVHLSNGLESNGIYHLNMNGERHSRSDSLTSYSCASPTASDAAA 957
Query: 61 WQGIYGTTHS 71
W+G YG HS
Sbjct: 958 WRGSYGPAHS 967
BLAST of Tan0020891 vs. TAIR 10
Match:
AT5G42140.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )
HSP 1 Score: 57.8 bits (138), Expect = 6.4e-09
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0
Query: 1 MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
+A LPPG Y+ E R+ +L NG E NG + N NG R SRS+S+S S ASP +
Sbjct: 886 IAALLPPGAYEAETTRTANLLNGFEQNGFHFTNANGQRQSRSDSMSDTSLASPLAMPARS 945
Query: 61 WQGIYGTTHS 71
G++ + S
Sbjct: 946 MNGLWRNSQS 955
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6578904.1 | 1.1e-26 | 74.71 | PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma ... | [more] |
| XP_023551654.1 | 1.1e-26 | 74.71 | PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG7016426.1 | 3.2e-26 | 73.56 | putative E3 ubiquitin-protein ligase HERC1 [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_022993843.1 | 3.2e-26 | 73.56 | PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima] | [more] |
| XP_022938703.1 | 3.2e-26 | 73.56 | PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1K3G5 | 1.5e-26 | 73.56 | PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 ... | [more] |
| A0A6J1FJN1 | 1.5e-26 | 73.56 | PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=366... | [more] |
| A0A6J1JR98 | 4.5e-26 | 87.14 | PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 ... | [more] |
| A0A0A0KI75 | 4.5e-26 | 83.10 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338030 PE=4 SV=1 | [more] |
| A0A6J1CJU4 | 4.5e-26 | 84.29 | uncharacterized protein LOC111011834 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G42140.1 | 6.4e-09 | 41.43 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | [more] |
