Tan0020891 (gene) Snake gourd v1

Overview


Name	Tan0020891
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	PH, RCC1 and FYVE domains-containing protein 1-like
Location	LG10: 30841324 .. 30842252 (+)
RNA-Seq Expression	Tan0020891
Synteny	Tan0020891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGAGGTTACCACCTGGAGTATATGATGTCGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGTGTCTACCATTTGAATATGAATGGAGACCGCCATTCACGATCTAATTCACTTAGCAGCTATTCTTGTGCATCTCCCACGACATCTGATGTTGCTGCTTGGCAAGGAATCTATGGCACAACTCATTCATTCACGTGTGCTCTTCAGGTGATGGTTCTCTTCTTTGTTTCTTTTTAGGTATCAACATCTAGAAATACAGTGATTTTTGTCTCTTTGGTGTTACTTGCAATTTGACTAGTTTCTGATTTAATTATTGAGTGAGAATATGCAATCCATGTGCTGAAGCTCCCTTGTTTGTAACATAAATTTTATTTGGGCTCTATAAATTTTTTAAAAATGGCCTCCATGATATCTCGAACATGCACTGTAGAACATTTTTGTACAAACTTGAATAACACTAATTTTTGTCTATTTTTTTACAATTATAATGCCCATAATGGTAAAATTGGATGGTCTTTTTGTGTTAGTTAGTTCCTCCTTGGGAGAGAGTTTGCTCTACCTCTACCCTTGGTTGCCCTCTTCTGTGGCTTTAATATACTCCTTAAAAGTTCAATTAAAAAAAAAAAAAAGAATTGTAGTGCAGGGACACTCTTAGGCAAAATTTTCTTCAAAAATTACTCTAAACTATGTAGCTCGCGGTTTTGGGCATCTAACACTTAGTGTTGGAATCTGAAGTAGAGTATAAGAAGCTCAAATGCGATGTTCTTATAATGTGTATTATAATTGCATTTACAGTCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATATGAGAGATATAACGTTCGGAGATCAGACAAGTCTTCAGTTTCGGGACTAA

mRNA sequence

ATGGCTGAGAGGTTACCACCTGGAGTATATGATGTCGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGTGTCTACCATTTGAATATGAATGGAGACCGCCATTCACGATCTAATTCACTTAGCAGCTATTCTTGTGCATCTCCCACGACATCTGATGTTGCTGCTTGGCAAGGAATCTATGGCACAACTCATTCATTCACGTTCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATATGAGAGATATAACGTTCGGAGATCAGACAAGTCTTCAGTTTCGGGACTAA

Coding sequence (CDS)

ATGGCTGAGAGGTTACCACCTGGAGTATATGATGTCGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGTGTCTACCATTTGAATATGAATGGAGACCGCCATTCACGATCTAATTCACTTAGCAGCTATTCTTGTGCATCTCCCACGACATCTGATGTTGCTGCTTGGCAAGGAATCTATGGCACAACTCATTCATTCACGTTCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGTGAGAAGGTATATGAGAGATATAACGTTCGGAGATCAGACAAGTCTTCAGTTTCGGGACTAA

Protein sequence

MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAAWQGIYGTTHSFTFGEDLESIKQKIGGQRTVRRYMRDITFGDQTSLQFRD

Homology

[Close]

BLAST of Tan0020891 vs. NCBI nr
Match: KAG6578904.1 (PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAAA 955

Query: 61  WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
           W G YGT HS     DL  + + I  Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979

[Close]

BLAST of Tan0020891 vs. NCBI nr
Match: XP_023551654.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAAA 955

Query: 61  WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
           W G YGT HS     DL  + + I  Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979

[Close]

BLAST of Tan0020891 vs. NCBI nr
Match: KAG7016426.1 (putative E3 ubiquitin-protein ligase HERC1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD A 
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAAV 955

Query: 61  WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
           W G YGT HS     DL  + + I  Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979

[Close]

BLAST of Tan0020891 vs. NCBI nr
Match: XP_022993843.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGVYHL++NG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSVNGERHSRSDSLSSYSCASPTASDAAA 955

Query: 61  WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
           W G YGT HS     DL  + + I  Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979

[Close]

BLAST of Tan0020891 vs. NCBI nr
Match: XP_022938703.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD  A
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAVA 955

Query: 61  WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
           W G YGT HS     DL  + + I  Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979

[Close]

BLAST of Tan0020891 vs. ExPASy TrEMBL
Match: A0A6J1K3G5 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489730 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGVYHL++NG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSVNGERHSRSDSLSSYSCASPTASDAAA 955

Query: 61  WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
           W G YGT HS     DL  + + I  Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979

[Close]

BLAST of Tan0020891 vs. ExPASy TrEMBL
Match: A0A6J1FJN1 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444850 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGVYHL+MNG+RHSRS+SLSSYSCASPT SD  A
Sbjct: 896 MAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAVA 955

Query: 61  WQGIYGTTHSFTFGEDLESIKQKIGGQ 88
           W G YGT HS     DL  + + I  Q
Sbjct: 956 WPGSYGTAHS---SRDLSGMNENIRQQ 979

[Close]

BLAST of Tan0020891 vs. ExPASy TrEMBL
Match: A0A6J1JR98 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486854 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNGV HLNMNG+RHSRS+SLSSYSCASPT SD AA
Sbjct: 898 MAERLPPGVYDAEKMRSVHLSNGLESNGVNHLNMNGERHSRSDSLSSYSCASPTASDAAA 957

Query: 61  WQGIYGTTHS 71
           WQG YG  HS
Sbjct: 958 WQGSYGAAHS 967

[Close]

BLAST of Tan0020891 vs. ExPASy TrEMBL
Match: A0A0A0KI75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338030 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRS+HLSNGLESNG YHL+MNG+RHSRS+S+SSYSCASPT S+ AA
Sbjct: 898 MAERLPPGVYDAEKMRSLHLSNGLESNGGYHLSMNGERHSRSDSVSSYSCASPTASEAAA 957

Query: 61  WQGIYGTTHSF 72
           WQG YGTTHS+
Sbjct: 958 WQGSYGTTHSY 968

[Close]

BLAST of Tan0020891 vs. ExPASy TrEMBL
Match: A0A6J1CJU4 (uncharacterized protein LOC111011834 OS=Momordica charantia OX=3673 GN=LOC111011834 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           MAERLPPGVYD EKMRSVHLSNGLESNG+YHLNMNG+RHSRS+SL+SYSCASPT SD AA
Sbjct: 898 MAERLPPGVYDAEKMRSVHLSNGLESNGIYHLNMNGERHSRSDSLTSYSCASPTASDAAA 957

Query: 61  WQGIYGTTHS 71
           W+G YG  HS
Sbjct: 958 WRGSYGPAHS 967

[Close]

BLAST of Tan0020891 vs. TAIR 10
Match: AT5G42140.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-09
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1   MAERLPPGVYDVEKMRSVHLSNGLESNGVYHLNMNGDRHSRSNSLSSYSCASPTTSDVAA 60
           +A  LPPG Y+ E  R+ +L NG E NG +  N NG R SRS+S+S  S ASP      +
Sbjct: 886 IAALLPPGAYEAETTRTANLLNGFEQNGFHFTNANGQRQSRSDSMSDTSLASPLAMPARS 945

Query: 61  WQGIYGTTHS 71
             G++  + S
Sbjct: 946 MNGLWRNSQS 955

The following BLAST results are available for this feature:

BLAST of Tan0020891 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0020891 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578904.1	1.1e-26	74.71	PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma ...	[more]
XP_023551654.1	1.1e-26	74.71	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7016426.1	3.2e-26	73.56	putative E3 ubiquitin-protein ligase HERC1 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022993843.1	3.2e-26	73.56	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima]	[more]
XP_022938703.1	3.2e-26	73.56	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata]	[more]

BLAST of Tan0020891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3G5	1.5e-26	73.56	PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FJN1	1.5e-26	73.56	PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1JR98	4.5e-26	87.14	PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A0A0KI75	4.5e-26	83.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338030 PE=4 SV=1	[more]
A0A6J1CJU4	4.5e-26	84.29	uncharacterized protein LOC111011834 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Tan0020891 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42140.1	6.4e-09	41.43	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020891.1	Tan0020891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding