Tan0019196 (gene) Snake gourd v1

Overview


Name	Tan0019196
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG10: 20164152 .. 20164385 (-)
RNA-Seq Expression	Tan0019196
Synteny	Tan0019196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGACATATTGGCCAAGAAGCATGAGGGCATGATTACCGCCAAAGAAATAATGGATTCTGTGCAGGGTATGTTTGGACAACAATCCACACAAGCCCGACATAATGCCCTAAAGTACATATTCAACTCGAGGATGCCAGAGGGTACATCTGTTCGAGATCATGTCCTGGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCGATGAGTCGAGCTAG

mRNA sequence

ATGTCTGACATATTGGCCAAGAAGCATGAGGGCATGATTACCGCCAAAGAAATAATGGATTCTGTGCAGGGTATGTTTGGACAACAATCCACACAAGCCCGACATAATGCCCTAAAGTACATATTCAACTCGAGGATGCCAGAGGGTACATCTGTTCGAGATCATGTCCTGGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCGATGAGTCGAGCTAG

Coding sequence (CDS)

ATGTCTGACATATTGGCCAAGAAGCATGAGGGCATGATTACCGCCAAAGAAATAATGGATTCTGTGCAGGGTATGTTTGGACAACAATCCACACAAGCCCGACATAATGCCCTAAAGTACATATTCAACTCGAGGATGCCAGAGGGTACATCTGTTCGAGATCATGTCCTGGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCGATGAGTCGAGCTAG

Protein sequence

MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMMVHFNIAESNGASIDESS

Homology

[Close]

BLAST of Tan0019196 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 8.0e-24
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +SD+LAKKHE  ITAKEIMDS+Q MFGQ S+QARH ALK+I+NSRM EG+SVR+HVL++M
Sbjct: 77  ISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGASIDE 76
           VHFN+AESNGA IDE
Sbjct: 137 VHFNVAESNGAVIDE 151

[Close]

BLAST of Tan0019196 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +SD+LAKKHE  +T KEIMDS+Q MFGQ S QARH ALK+++NSRM EG+SVR+HVL++M
Sbjct: 77  ISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AESNG  IDE S
Sbjct: 137 VHFNVAESNGIVIDEQS 153

[Close]

BLAST of Tan0019196 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 54/77 (70.13%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MM
Sbjct: 77  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AE NGA IDE+S
Sbjct: 137 VHFNVAEMNGAVIDEAS 153

[Close]

BLAST of Tan0019196 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 54/77 (70.13%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MM
Sbjct: 76  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 135

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AE NGA IDE+S
Sbjct: 136 VHFNVAEMNGAVIDEAS 152

[Close]

BLAST of Tan0019196 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 54/77 (70.13%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MM
Sbjct: 77  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AE NGA IDE+S
Sbjct: 137 VHFNVAEMNGAVIDEAS 153

[Close]

BLAST of Tan0019196 vs. ExPASy TrEMBL
Match: A0A6J1DFZ2 (uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020095 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-24
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +SD+LAKKHE  ITAKEIMDS+Q MFGQ S+QARH ALK+I+NSRM EG+SVR+HVL++M
Sbjct: 77  ISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGASIDE 76
           VHFN+AESNGA IDE
Sbjct: 137 VHFNVAESNGAVIDE 151

[Close]

BLAST of Tan0019196 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.6e-23
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +SD+LAKKHE  +T KEIMDS+Q MFGQ S QARH ALK+++NSRM EG+SVR+HVL++M
Sbjct: 77  ISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNSRMKEGSSVREHVLNLM 136

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AESNG  IDE S
Sbjct: 137 VHFNVAESNGIVIDEQS 153

[Close]

BLAST of Tan0019196 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.6e-23
Identity = 54/77 (70.13%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MM
Sbjct: 77  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AE NGA IDE+S
Sbjct: 137 VHFNVAEMNGAVIDEAS 153

[Close]

BLAST of Tan0019196 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.6e-23
Identity = 54/77 (70.13%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MM
Sbjct: 77  LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AE NGA IDE+S
Sbjct: 137 VHFNVAEMNGAVIDEAS 153

[Close]

BLAST of Tan0019196 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.6e-23
Identity = 54/77 (70.13%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMPEGTSVRDHVLDMM 60
           +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MM
Sbjct: 194 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 253

Query: 61  VHFNIAESNGASIDESS 78
           VHFN+AE NGA IDE+S
Sbjct: 254 VHFNVAEMNGAVIDEAS 270

The following BLAST results are available for this feature:

BLAST of Tan0019196 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019196 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152352.1	8.0e-24	76.00	uncharacterized protein LOC111020095 [Momordica charantia]	[more]
XP_022158197.1	1.2e-22	70.13	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
KAA0044955.1	2.0e-22	70.13	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.0e-22	70.13	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.0e-22	70.13	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0019196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFZ2	3.9e-24	76.00	uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DWL0	5.6e-23	70.13	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7SMH8	9.6e-23	70.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	9.6e-23	70.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	9.6e-23	70.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]

BLAST of Tan0019196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..76
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0019196.1	Tan0019196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding