Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGGTTGTTTTGGTGCTGGAATTGCAGAAGTTGGGGGAGGTGAACTCAAAGTTTGATTATTTAGCAGCAAGGTGAGCAACTCCAATCCTATTCTGGTTTTCTGTTCATCTCGAGCTCCACAGGAAGAGGTAAGATTTGAAATTTTGTTTCATGAAAGTTAACTCATATTGGAACACAATTCGTGAAGGATGCTCGAGCAAATTCGGATCTTAAGCTACTGATTTGTGAAAAGGAAGACAGAACACAGAATTTACTGTCAAATCCGAGAAGTCTCTGATGTTTTGGTTGTACTGACCTGTAGAGTTGGAATCCGAAGCTCTATTAGGTATGGTTGGAAATCTTATTGAATTTCCTACAACTTTCGTGAAGAATTCGTGAATAGAAAATGACTGGAAAATGTTGTAAATAGCAGGTCAAGTTTCGGGTTGCAGCAGAACATCGAATCTGGAATAGCAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGAGTTTTAGAGGGTTCAAAAAGGAAGAGTTTGGTATAAAGTACATTATTTTTGGATAAGTAATGAAGAAGTTATGAGTATCTGAATACAGGGCATAAAATCTGTTAAATGCTGGAATTTTTGAAAGTGTGTTTTCTTGTAAGTTTAAGGTTAAAAACCATGAGCTCGAGGTTCTAAAACATGGTTTTGGTTTGTTTGACAGGCCAGGAACAAAAGGTCGAGTGTACGGGTCAAGACTTTAGTTCTAACACTGTGAGTGACAAAACGAACCTTGAAAATGGTTTATAGGCTTGTATTATGCTTATGAAATGCAAGGTTTTGCTAAAACGAAATGGTTTAGATGTTTATTGTTTTCTTGAACACTTGTTTATGAGCATTCATGATTTCTTAGAAATGTTTTAAAGTGTTCATGATGAGCCTAAAAGTCTTTATAAAGTTTATACATGAGCATATGTCCAATGGTTGCCAAAACTTATGAAAATGTGATGATTTCAAGCAAGCATGTACTAGCAAGTATGTTTTAAAGATTTCTAGTTTTATGAACAAGCTAAGTAAGCTTGAGTTTTATGAAAGAAAAAGATAAGCTGGCATGTTCAAATGTTTTCATGTGATCTTCTGAGATATTGAGCCCGAGGTTATGTAGTACCGTGTGCACACAGGTCTTATTCTTTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
mRNA sequence
ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Coding sequence (CDS)
ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Protein sequence
MKGKGFVGEALRKRKKLVPGKEDFEVFLNQSIGNLIFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
Homology
BLAST of Tan0018310 vs. NCBI nr
Match:
KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])
HSP 1 Score: 60.8 bits (146), Expect = 5.4e-06
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 36 IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+ + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 33 VSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69
BLAST of Tan0018310 vs. NCBI nr
Match:
KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VL DN AVVSAG+APLRQRRWEC GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137
BLAST of Tan0018310 vs. NCBI nr
Match:
TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VL DN AVVSAG+APLRQRRWEC GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137
BLAST of Tan0018310 vs. NCBI nr
Match:
KAA0040296.1 (hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa])
HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VLR+N A VSAGR PLRQRRWEC GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237
BLAST of Tan0018310 vs. NCBI nr
Match:
TYK27262.1 (hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa])
HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VLR+N A VSAGR PLRQRRWEC GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match:
A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 36 IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+ + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 33 VSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match:
A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VL DN AVVSAG+APLRQRRWEC GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match:
A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VL DN AVVSAG+APLRQRRWEC GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match:
A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VLR+N A VSAGR PLRQRRWEC GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match:
A0A5D3DUS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00290 PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0
Query: 38 MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
+S+ VLR+N A VSAGR PLRQRRWEC GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0033241.1 | 5.4e-06 | 67.57 | hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041... | [more] |
| KAA0037581.1 | 6.0e-05 | 74.29 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| TYK03091.1 | 6.0e-05 | 74.29 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| KAA0040296.1 | 1.3e-04 | 71.43 | hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa] | [more] |
| TYK27262.1 | 1.7e-04 | 71.43 | hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SUV2 | 2.6e-06 | 67.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BTP3 | 2.9e-05 | 74.29 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... | [more] |
| A0A5A7T7M6 | 2.9e-05 | 74.29 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
| A0A5A7TDY3 | 6.4e-05 | 71.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DUS7 | 8.4e-05 | 71.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
