Tan0018310 (gene) Snake gourd v1

Overview
NameTan0018310
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
LocationLG03: 21397454 .. 21398809 (+)
RNA-Seq ExpressionTan0018310
SyntenyTan0018310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGGTTGTTTTGGTGCTGGAATTGCAGAAGTTGGGGGAGGTGAACTCAAAGTTTGATTATTTAGCAGCAAGGTGAGCAACTCCAATCCTATTCTGGTTTTCTGTTCATCTCGAGCTCCACAGGAAGAGGTAAGATTTGAAATTTTGTTTCATGAAAGTTAACTCATATTGGAACACAATTCGTGAAGGATGCTCGAGCAAATTCGGATCTTAAGCTACTGATTTGTGAAAAGGAAGACAGAACACAGAATTTACTGTCAAATCCGAGAAGTCTCTGATGTTTTGGTTGTACTGACCTGTAGAGTTGGAATCCGAAGCTCTATTAGGTATGGTTGGAAATCTTATTGAATTTCCTACAACTTTCGTGAAGAATTCGTGAATAGAAAATGACTGGAAAATGTTGTAAATAGCAGGTCAAGTTTCGGGTTGCAGCAGAACATCGAATCTGGAATAGCAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGAGTTTTAGAGGGTTCAAAAAGGAAGAGTTTGGTATAAAGTACATTATTTTTGGATAAGTAATGAAGAAGTTATGAGTATCTGAATACAGGGCATAAAATCTGTTAAATGCTGGAATTTTTGAAAGTGTGTTTTCTTGTAAGTTTAAGGTTAAAAACCATGAGCTCGAGGTTCTAAAACATGGTTTTGGTTTGTTTGACAGGCCAGGAACAAAAGGTCGAGTGTACGGGTCAAGACTTTAGTTCTAACACTGTGAGTGACAAAACGAACCTTGAAAATGGTTTATAGGCTTGTATTATGCTTATGAAATGCAAGGTTTTGCTAAAACGAAATGGTTTAGATGTTTATTGTTTTCTTGAACACTTGTTTATGAGCATTCATGATTTCTTAGAAATGTTTTAAAGTGTTCATGATGAGCCTAAAAGTCTTTATAAAGTTTATACATGAGCATATGTCCAATGGTTGCCAAAACTTATGAAAATGTGATGATTTCAAGCAAGCATGTACTAGCAAGTATGTTTTAAAGATTTCTAGTTTTATGAACAAGCTAAGTAAGCTTGAGTTTTATGAAAGAAAAAGATAAGCTGGCATGTTCAAATGTTTTCATGTGATCTTCTGAGATATTGAGCCCGAGGTTATGTAGTACCGTGTGCACACAGGTCTTATTCTTTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

mRNA sequence

ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

Coding sequence (CDS)

ATGAAAGGTAAGGGTTTCGTGGGAGAAGCTTTAAGGAAGAGGAAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCATGTCTTCATACGATGTACTCCGTGACAACAGCGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG

Protein sequence

MKGKGFVGEALRKRKKLVPGKEDFEVFLNQSIGNLIFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
Homology
[Close]
BLAST of Tan0018310 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-06
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 36 IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
          + + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 33 VSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Tan0018310 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Tan0018310 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Tan0018310 vs. NCBI nr
Match: KAA0040296.1 (hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

[Close]
BLAST of Tan0018310 vs. NCBI nr
Match: TYK27262.1 (hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

[Close]
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 36 IFMSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
          + + + +VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 33 VSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VL DN AVVSAG+APLRQRRWEC  GPTTS
Sbjct: 103 LSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

[Close]
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match: A0A5D3DUS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00290 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 38  MSSYDVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 73
           +S+  VLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 262 LSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

The following BLAST results are available for this feature:
BLAST of Tan0018310 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033241.15.4e-0667.57hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041... [more]
KAA0037581.16.0e-0574.29reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.16.0e-0574.29reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0040296.11.3e-0471.43hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa][more]
TYK27262.11.7e-0471.43hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa][more]
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SUV22.6e-0667.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTP32.9e-0574.29Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M62.9e-0574.29Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TDY36.4e-0571.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DUS78.4e-0571.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Tan0018310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0018310.1Tan0018310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding