Tan0016707 (gene) Snake gourd v1

Overview
NameTan0016707
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG10: 40639626 .. 40640107 (-)
RNA-Seq ExpressionTan0016707
SyntenyTan0016707
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAAGTCTAAGCATTCAATTCCCCGTTTCATCTCTTTCCTTATTAATAATCCCCTCTTCTCATTAAATTCCCACCGCTTTCCTTTTCCCTTAAGATCTTCAAATCCAAATCCTCCTTCCTTTTCCAATGGCCTCTCTCGTCCTTCTCCTCTCCGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTTCCTCTTCCGCCGCCACCGCCGAGTGACTGTCACAACAACAGCCGGATCTCCGTCGATGAAACTCAAATGGATGAATTTCTCAAGGAATCTAGGGTTTGGGTTGATTTGATTTGGCCCTAGCTAATTTCAATTTCAACTTACTTCCACTCCTGGATTTTGCTTCCTTCTCCTTCTGTTCTTGCTTTGTAATGTCGATTTATTTGTTTTATCCTCAATTTCGAGGGGGAAATTTTCATCGATCTGTAAAGATAATGGTGGAAGTGAGTTCTATTTGCTGAAA

mRNA sequence

TCTAAGTCTAAGCATTCAATTCCCCGTTTCATCTCTTTCCTTATTAATAATCCCCTCTTCTCATTAAATTCCCACCGCTTTCCTTTTCCCTTAAGATCTTCAAATCCAAATCCTCCTTCCTTTTCCAATGGCCTCTCTCGTCCTTCTCCTCTCCGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTTCCTCTTCCGCCGCCACCGCCGAGTGACTGTCACAACAACAGCCGGATCTCCGTCGATGAAACTCAAATGGATGAATTTCTCAAGGAATCTAGGGTTTGGGTTGATTTGATTTGGCCCTAGCTAATTTCAATTTCAACTTACTTCCACTCCTGGATTTTGCTTCCTTCTCCTTCTGTTCTTGCTTTGTAATGTCGATTTATTTGTTTTATCCTCAATTTCGAGGGGGAAATTTTCATCGATCTGTAAAGATAATGGTGGAAGTGAGTTCTATTTGCTGAAA

Coding sequence (CDS)

ATGGCCTCTCTCGTCCTTCTCCTCTCCGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTTCCTCTTCCGCCGCCACCGCCGAGTGACTGTCACAACAACAGCCGGATCTCCGTCGATGAAACTCAAATGGATGAATTTCTCAAGGAATCTAGGGTTTGGGTTGATTTGATTTGGCCCTAG

Protein sequence

MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRISVDETQMDEFLKESRVWVDLIWP
Homology
BLAST of Tan0016707 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 8.2e-14
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPP---------------PSD-CHNN-SRISV 57
          MASLVLLLSEL+RHHNTNPDYWLT+PLPPPP               PS+ C++N SRI  
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSNKSRICA 60

BLAST of Tan0016707 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPP-----------------PPSDC----HNNS 58
          MASL+LLLS+L+RHH+TNPDY LTLP PP                  P SDC    +  +
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

BLAST of Tan0016707 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLP---PPPPS 34
          MASLVLLLSELVRHHNTNPDYWLTLPLP   PPPPS
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPS 36

BLAST of Tan0016707 vs. NCBI nr
Match: PON93800.1 (hypothetical protein TorRG33x02_105030 [Trema orientale])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 35/87 (40.23%), Postives = 43/87 (49.43%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRIS------------------ 60
          MASL+LLLSELV HHN +PD+W+ L  PP   S   ++S  S                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 -----VDETQMDEFLKESRVWVDLIWP 65
                D    +  LKESRV VDL+WP
Sbjct: 61 ETKKCYDNVSDENDLKESRVCVDLVWP 87

BLAST of Tan0016707 vs. NCBI nr
Match: PON39745.1 (hypothetical protein PanWU01x14_302520 [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 33/82 (40.24%), Postives = 42/82 (51.22%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRISV----------------- 60
          MASL+LLLSELV HHN +PD+W+ L  P    S   ++S  +                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKETKKC 60

Query: 61 -DETQMDEFLKESRVWVDLIWP 65
           D    +  LKESRV VDL+WP
Sbjct: 61 HDNVSHENDLKESRVCVDLVWP 82

BLAST of Tan0016707 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 47/85 (55.29%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPP-----------------PPSDC----HNNS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP                  P SDC    +  +
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RISVDETQMDEFLKESRVWVDLIWP 65
          RI  DE  MDEFLKESRV VDLIWP
Sbjct: 61 RICADENVMDEFLKESRVCVDLIWP 85

BLAST of Tan0016707 vs. ExPASy TrEMBL
Match: A0A2P5F7L7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-06
Identity = 35/87 (40.23%), Postives = 43/87 (49.43%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRIS------------------ 60
          MASL+LLLSELV HHN +PD+W+ L  PP   S   ++S  S                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 -----VDETQMDEFLKESRVWVDLIWP 65
                D    +  LKESRV VDL+WP
Sbjct: 61 ETKKCYDNVSDENDLKESRVCVDLVWP 87

BLAST of Tan0016707 vs. ExPASy TrEMBL
Match: A0A2P5AT80 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 33/82 (40.24%), Postives = 42/82 (51.22%), Query Frame = 0

Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRISV----------------- 60
          MASL+LLLSELV HHN +PD+W+ L  P    S   ++S  +                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKETKKC 60

Query: 61 -DETQMDEFLKESRVWVDLIWP 65
           D    +  LKESRV VDL+WP
Sbjct: 61 HDNVSHENDLKESRVCVDLVWP 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038904495.18.2e-1464.38uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida][more]
KAE8651190.11.3e-0851.28hypothetical protein Csa_001669 [Cucumis sativus][more]
KAG6580906.13.0e-0891.67hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON93800.11.1e-0540.23hypothetical protein TorRG33x02_105030 [Trema orientale][more]
PON39745.12.4e-0540.24hypothetical protein PanWU01x14_302520 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
A0A0A0LHI45.7e-1355.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1[more]
A0A2P5F7L75.2e-0640.23Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV... [more]
A0A2P5AT801.2e-0540.24Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016707.1Tan0016707.1mRNA