Tan0016707.1 (mRNA) Snake gourd v1

Overview


Name	Tan0016707.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 40639626 .. 40640107 (-)
Sequence length	482
RNA-Seq Expression	Tan0016707.1
Synteny	Tan0016707.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAAGTCTAAGCATTCAATTCCCCGTTTCATCTCTTTCCTTATTAATAATCCCCTCTTCTCATTAAATTCCCACCGCTTTCCTTTTCCCTTAAGATCTTCAAATCCAAATCCTCCTTCCTTTTCCAATGGCCTCTCTCGTCCTTCTCCTCTCCGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTTCCTCTTCCGCCGCCACCGCCGAGTGACTGTCACAACAACAGCCGGATCTCCGTCGATGAAACTCAAATGGATGAATTTCTCAAGGAATCTAGGGTTTGGGTTGATTTGATTTGGCCCTAGCTAATTTCAATTTCAACTTACTTCCACTCCTGGATTTTGCTTCCTTCTCCTTCTGTTCTTGCTTTGTAATGTCGATTTATTTGTTTTATCCTCAATTTCGAGGGGGAAATTTTCATCGATCTGTAAAGATAATGGTGGAAGTGAGTTCTATTTGCTGAAA

mRNA sequence

TCTAAGTCTAAGCATTCAATTCCCCGTTTCATCTCTTTCCTTATTAATAATCCCCTCTTCTCATTAAATTCCCACCGCTTTCCTTTTCCCTTAAGATCTTCAAATCCAAATCCTCCTTCCTTTTCCAATGGCCTCTCTCGTCCTTCTCCTCTCCGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTTCCTCTTCCGCCGCCACCGCCGAGTGACTGTCACAACAACAGCCGGATCTCCGTCGATGAAACTCAAATGGATGAATTTCTCAAGGAATCTAGGGTTTGGGTTGATTTGATTTGGCCCTAGCTAATTTCAATTTCAACTTACTTCCACTCCTGGATTTTGCTTCCTTCTCCTTCTGTTCTTGCTTTGTAATGTCGATTTATTTGTTTTATCCTCAATTTCGAGGGGGAAATTTTCATCGATCTGTAAAGATAATGGTGGAAGTGAGTTCTATTTGCTGAAA

Coding sequence (CDS)

ATGGCCTCTCTCGTCCTTCTCCTCTCCGAACTCGTCCGCCACCACAACACCAATCCCGATTACTGGCTCACTCTTCCTCTTCCGCCGCCACCGCCGAGTGACTGTCACAACAACAGCCGGATCTCCGTCGATGAAACTCAAATGGATGAATTTCTCAAGGAATCTAGGGTTTGGGTTGATTTGATTTGGCCCTAG

Protein sequence

MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRISVDETQMDEFLKESRVWVDLIWP

Homology

[Close]

BLAST of Tan0016707.1 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 8.2e-14
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPP---------------PSD-CHNN-SRISV 57
          MASLVLLLSEL+RHHNTNPDYWLT+PLPPPP               PS+ C++N SRI  
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSNKSRICA 60

[Close]

BLAST of Tan0016707.1 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPP-----------------PPSDC----HNNS 58
          MASL+LLLS+L+RHH+TNPDY LTLP PP                  P SDC    +  +
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

[Close]

BLAST of Tan0016707.1 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLP---PPPPS 34
          MASLVLLLSELVRHHNTNPDYWLTLPLP   PPPPS
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPS 36

[Close]

BLAST of Tan0016707.1 vs. NCBI nr
Match: PON93800.1 (hypothetical protein TorRG33x02_105030 [Trema orientale])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 35/87 (40.23%), Postives = 43/87 (49.43%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRIS------------------ 60
          MASL+LLLSELV HHN +PD+W+ L  PP   S   ++S  S                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 -----VDETQMDEFLKESRVWVDLIWP 65
                D    +  LKESRV VDL+WP
Sbjct: 61 ETKKCYDNVSDENDLKESRVCVDLVWP 87

[Close]

BLAST of Tan0016707.1 vs. NCBI nr
Match: PON39745.1 (hypothetical protein PanWU01x14_302520 [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 33/82 (40.24%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRISV----------------- 60
          MASL+LLLSELV HHN +PD+W+ L  P    S   ++S  +                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKETKKC 60

Query: 61 -DETQMDEFLKESRVWVDLIWP 65
           D    +  LKESRV VDL+WP
Sbjct: 61 HDNVSHENDLKESRVCVDLVWP 82

[Close]

BLAST of Tan0016707.1 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 47/85 (55.29%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPP-----------------PPSDC----HNNS 60
          MASL+LLLS+L+RHH+TNPDY LTLP PP                  P SDC    +  +
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RISVDETQMDEFLKESRVWVDLIWP 65
          RI  DE  MDEFLKESRV VDLIWP
Sbjct: 61 RICADENVMDEFLKESRVCVDLIWP 85

[Close]

BLAST of Tan0016707.1 vs. ExPASy TrEMBL
Match: A0A2P5F7L7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-06
Identity = 35/87 (40.23%), Postives = 43/87 (49.43%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRIS------------------ 60
          MASL+LLLSELV HHN +PD+W+ L  PP   S   ++S  S                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 -----VDETQMDEFLKESRVWVDLIWP 65
                D    +  LKESRV VDL+WP
Sbjct: 61 ETKKCYDNVSDENDLKESRVCVDLVWP 87

[Close]

BLAST of Tan0016707.1 vs. ExPASy TrEMBL
Match: A0A2P5AT80 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 33/82 (40.24%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPPPPPSDCHNNSRISV----------------- 60
          MASL+LLLSELV HHN +PD+W+ L  P    S   ++S  +                  
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKETKKC 60

Query: 61 -DETQMDEFLKESRVWVDLIWP 65
           D    +  LKESRV VDL+WP
Sbjct: 61 HDNVSHENDLKESRVCVDLVWP 82

The following BLAST results are available for this feature:

BLAST of Tan0016707.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016707.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904495.1	8.2e-14	64.38	uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida]	[more]
KAE8651190.1	1.3e-08	51.28	hypothetical protein Csa_001669 [Cucumis sativus]	[more]
KAG6580906.1	3.0e-08	91.67	hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON93800.1	1.1e-05	40.23	hypothetical protein TorRG33x02_105030 [Trema orientale]	[more]
PON39745.1	2.4e-05	40.24	hypothetical protein PanWU01x14_302520 [Parasponia andersonii]	[more]

BLAST of Tan0016707.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHI4	5.7e-13	55.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1	[more]
A0A2P5F7L7	5.2e-06	40.23	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV...	[more]
A0A2P5AT80	1.2e-05	40.24	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE...	[more]

BLAST of Tan0016707.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0016707	Tan0016707	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016707.1-three_prime_utr	Tan0016707.1-three_prime_utr-LG10:40639626..40639785	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016707.1-exon	Tan0016707.1-exon-LG10:40639626..40640107	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016707.1-cds	Tan0016707.1-cds-LG10:40639786..40639980	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0016707.1-five_prime_utr	Tan0016707.1-five_prime_utr-LG10:40639981..40640107	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0016707.1	Tan0016707.1-protein	polypeptide