Tan0010921 (gene) Snake gourd v1

Overview
NameTan0010921
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionupstream activation factor subunit spp27-like
LocationLG06: 72245227 .. 72248265 (+)
RNA-Seq ExpressionTan0010921
SyntenyTan0010921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCGAGCAAAAGCGGCAAAACAAAAACCCCTGAACCCACCGTCGTCTTCCTCGTAGCAAAATGGCGTCAGGTCTTAGCAATGGAACCAAGTTATTCAGAGCTTGCAGAACCCTCTTGGATTCACTCAAATCCCCCTCTCAAGCTTACTCTTCTGCTGCTGCGATCTCTCCCAAGGGAAAGCTAAAAGCTTCAACTTCCGGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGTCAATCGTTCGTCGGGGATTTTTAAGTCCGTCCAAGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGCCCCAGACTTCGCGTTCCGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAACCTCCAGGTTCATTTCATTTCTCTATTGTTTTTCCTGATATGACCTAATTTTTCTTTTGCGTATCGTTGTTCTAGTTCCTTGTTTCCTGCAGTGTGTTCGTTTGTCTCGTGAATGGAATGCCTTGAGAGTTAATTTTAACTTAGCTTAGAGCTTGAAGTTTTGGGTGTAGTGTTGATTTCGTAGAGTTTCTTCCTTTTAGTTCTCAGTTGCTGAATCTAAGGTCTCTGAAATGGAAGTTCTGAATTTGAAAATTAGGTTAAATCATAGGTGGCATCCCACATTGAAAAAGTTGAGTGAAACACTCACAATATATAAGATATATGGACTCTCCTCCCCTTGCCAATTGATTTTGAGATGAAATCCCATGTAATCTAATATAGTATCAGAGCCCATTAAGCCCATATGGGCATTCGGTCGGCATTCGGTAAAAAAAAAAATAATGGTAAACCAAAAAACGCACCATCGTGAGAGGGCATGTTGAGACATTGGAACAGTGGAGAGAAACCTCACAATATATAAGATATATGGCTACTACTCCCATTACCAATTGGTGTTGAGATGAAACTCCATATAATCTAATAAACTCTACTCTTTTATAGTTCACGAATTAAATAATCCTAAAACTATAAGGGTTAAATTTATAATTTATAAGATGAACATGGAGCATCTTTTCCCTCTGTAAGGTGCAATTTTGAACCTTCCACGTTTTTTGTAATTCATTAAAAAGAACCATTTAACGTACTTCATTTTTTTTTCGTTTAGGGTATTGTAACAAATATATGCGTTTAGTCCAGAGGAATCAATCACGATGCTGTATTTATACCTCTTCTTAAGTTTCATTTGCCTTGAATAATCAACAAGCTATTTTGGCCATAAATGCATTTTTTGAACAAGGTAGTTTAAAGGATTGAATGCTACTGTGAGCTTTTTCTTTTCACATGGATTTGGGTTTGTGCTCTGCTCCAAAAAAGTTAGCTACTACTCAGAGCTGGGAGCACCTACCCAAATCCCTGTCCAATACATTTGAGGGAAGCCCCCCGATGTCCGGTCCAATTTTTGGGTGTAAATACTTCAGTTGAAGTTCATGAAAGGCTAAACCAGGATTTTCTGCCTCTTGATCAAATGAAATGGGTATGTTTGCTATGAGTTTCTAAAGGGTGTGTGAGTATACACTGATTACTTCTCCCATCTTGCCCTAGAATGTGAATATTTAAGCCTTGTTTGATAACCATTTGGTTTTTTTTTTTTTTTTTTTTTTTTTAATTAGGTTTGTTTTTTCACAATTTCTTTTCATTTTCTCTACCATGATTTCCATCTTTCTTGACGTAAGACTTAAGTTCCTAACGAAATTTCAACAACAAAAACAAAATTTTGAAATCTACTTTTTTTTAGTTTTCAAAACTTAGCTTGGTTTTTGAAAACATATGTACAAAGTAGATAAAACATAGAAACTCATTGGTAGAAGTTGTATTCTTAATTTTCAAAGACCAAAAACCAAATAGATATCACTTATTTATTTTTGTTTGAAACACCCTAGAAGTGAACTAATTTAGCCTGCCATTGCTCTTCAATTAACATTGTGGTTAAATGAGAATGAAAATGTTGGTAAATGTATCAATATAATGTTGCTACTATTTAAAAAAAAGTCTTGCAATGTACATAAACTCCTAAACATAGTTTAAAATAGTTACAAATTATCTTTATTAGTAGTTGTAATAGTAGTTGTCTGCCACACCAAACCAATTTAGTCAAAATTTATTTAATGGGGTATGTCATATTAGTATTCTATTAATGGTGTTAACAGTAGACATTGAATATTAGTATAATTTAACATTGAGAGGTATAGTCTTCAATATATATGAACTGAAATTATAATTTAACCTAGTATTACTTTTCTTTTTCTTTTTTGGTAAGGTTTTGCTGATATAACACTCTCACACACACACACACAATTTGGTGTGCAGAACCCAACTGATAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGACTATATTTGATGGAAGAGAGAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAGTCTAGTTAACCATCAAACTTCCAGTGCCATGCATCGACTTAGTTGTTCTAACAGTTCTCTCTCAACCTGTCTTCCAAATCCTTGATGATGTTTTGGCTAATCCTATGGCTTCAGTGTACTCTTTGGTTTGCCTCTGATTTAAGAAAAAAGAGGTATTTCTTACTCAGACATTGTTGTTGATTATGCTTTTAGCTTTTAAATGGTTTGTTACATTCAATGTTAGTCTCCTTGGAAGAACTAGAAGACAAGAAAAACCCACAAGAACTGGCTTGAACTGGGGATATCTGCTTTGCTGCTACCCTAAACATTTTGAAGATTAGGTGTTCTTTCTGTTTTCTTTTTATGTATGGCCTGTTTTTCTTTTTTTGTTTTTTACAACTGTTTTATAGAGCTGTTTAAAGAAAACTGTATGGCCATTCACTAGTTCACTTATTATATGTCTTTTCCCCCCTCTTTGCCTCTCCTGTACTTTATTTTCAAAACTGAAAAATGTTCTCTATAAGATTTTTTTTTAAGGAATGAATTATGTTAAATTAAATGGGGAGAACACTATGAAAGAAAGGAAGAAGAATGAGTGAAAAGTGATTGATAATTTGAC

mRNA sequence

GTCGAGCAAAAGCGGCAAAACAAAAACCCCTGAACCCACCGTCGTCTTCCTCGTAGCAAAATGGCGTCAGGTCTTAGCAATGGAACCAAGTTATTCAGAGCTTGCAGAACCCTCTTGGATTCACTCAAATCCCCCTCTCAAGCTTACTCTTCTGCTGCTGCGATCTCTCCCAAGGGAAAGCTAAAAGCTTCAACTTCCGGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGTCAATCGTTCGTCGGGGATTTTTAAGTCCGTCCAAGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGCCCCAGACTTCGCGTTCCGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGACTATATTTGATGGAAGAGAGAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAGTCTAGTTAACCATCAAACTTCCAGTGCCATGCATCGACTTAGTTGTTCTAACAGTTCTCTCTCAACCTGTCTTCCAAATCCTTGATGATGTTTTGGCTAATCCTATGGCTTCAGTGTACTCTTTGGTTTGCCTCTGATTTAAGAAAAAAGAGGTATTTCTTACTCAGACATTGTTGTTGATTATGCTTTTAGCTTTTAAATGGTTTGTTACATTCAATGTTAGTCTCCTTGGAAGAACTAGAAGACAAGAAAAACCCACAAGAACTGGCTTGAACTGGGGATATCTGCTTTGCTGCTACCCTAAACATTTTGAAGATTAGGTGTTCTTTCTGTTTTCTTTTTATGTATGGCCTGTTTTTCTTTTTTTGTTTTTTACAACTGTTTTATAGAGCTGTTTAAAGAAAACTGTATGGCCATTCACTAGTTCACTTATTATATGTCTTTTCCCCCCTCTTTGCCTCTCCTGTACTTTATTTTCAAAACTGAAAAATGTTCTCTATAAGATTTTTTTTTAAGGAATGAATTATGTTAAATTAAATGGGGAGAACACTATGAAAGAAAGGAAGAAGAATGAGTGAAAAGTGATTGATAATTTGAC

Coding sequence (CDS)

ATGGCGTCAGGTCTTAGCAATGGAACCAAGTTATTCAGAGCTTGCAGAACCCTCTTGGATTCACTCAAATCCCCCTCTCAAGCTTACTCTTCTGCTGCTGCGATCTCTCCCAAGGGAAAGCTAAAAGCTTCAACTTCCGGCAAAAAATCGGAAGCCGGAGAGAAGAAAGAGGTCAATCGTTCGTCGGGGATTTTTAAGTCCGTCCAAGTTTCTCCGGCTCTCGCTGGCTTCCTCGGCATGCCCCAGACTTCGCGTTCCGAAGCCGTCAAGCAAATATGGTCCTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGACTATATTTGATGGAAGAGAGAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAGTCTAGTTAA

Protein sequence

MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKASTSGKKSEAGEKKEVNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLKTIFDGREKVGFLEIGKLLSPHFVKSS
Homology
BLAST of Tan0010921 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 39/90 (43.33%), Postives = 62/90 (68.89%), Query Frame = 0

Query: 38  KGKLKASTSGKKSEAGE---KKEVNR---SSGIFKSVQVSPALAGFLGMPQTSRSEAVKQ 97
           +GK  A  + K+ E GE   K++ N+   ++ + K +++SP LA FLG+ Q SR + VK+
Sbjct: 85  EGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKK 144

Query: 98  IWSYIKLNNLQNPTDKRQINCDEKLKTIFD 122
           +W YIK ++LQ+P DKR I CD+KLK++F+
Sbjct: 145 LWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

BLAST of Tan0010921 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-10
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 40  KLKASTSGKKSEAGEKKEVNRSSGI-FKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKL 99
           K K  +  K     +K +   S+ I  + V +S  L  FLG  +  R++ VK IW YIK 
Sbjct: 95  KRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKE 154

Query: 100 NNLQNPTDKRQINCDEKLKTIFDGREKVGFLEIGKLLSPH 139
           ++LQNP D+R+I CDEK++ IF   +K+    + KLL+ H
Sbjct: 155 HDLQNPKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

BLAST of Tan0010921 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 39  GKLKASTSGKKSEAGEKK-EVNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIK 98
           G+ K  +  K +   +KK  V++S    + V +S +LA  LG  + +R+E V+++W+YIK
Sbjct: 94  GEEKNDSETKGTHVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIK 153

Query: 99  LNNLQNPTDKRQINCDEKLKTIFDGREKVGFLEIGKLLSPHFVK 142
            +NLQNP +K++I CDEKL+ I    +     E+ K+L+ H  +
Sbjct: 154 AHNLQNPNNKKEILCDEKLELILG--KSTNMFEMHKILASHMTE 195

BLAST of Tan0010921 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.5e-06
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 69  QVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLKTIFDGREKVGF 128
           ++S A A  LG+ + +R + V  +W YIK + LQ+  +KR INCD+ L+ +F+  +++ F
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYF 266

Query: 129 LEIGKLLS 137
             I +L++
Sbjct: 267 PRIPELMN 273

BLAST of Tan0010921 vs. ExPASy Swiss-Prot
Match: Q6STE5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens OX=9606 GN=SMARCD3 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.5e-05
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0

Query: 69  QVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLKTIFD 122
           ++ P LA  LG+   SRS  V+ +W Y+K N LQ+  DK  IN D+  + IFD
Sbjct: 264 KLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 316

BLAST of Tan0010921 vs. NCBI nr
Match: XP_023000110.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-57
Identity = 123/146 (84.25%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAS---TSGKKSEAGEKKE 60
           MASGL+NGT+LFR CRTLLDSLKS +QAYSSAAA+SPKG+LKAS    S KKSEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            NRS GIFKSVQVSPALAGFLGM ++SRSEAVKQIWSYIKLN+LQNP +KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKSS 144
            IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

BLAST of Tan0010921 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-57
Identity = 122/146 (83.56%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAS---TSGKKSEAGEKKE 60
           MASGL+NGT+LFR CRTLLDSLKS +QAYSSAAA+SPKG++KAS    S KKSEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKASGAAASRKKSEAGEKKE 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            NRS GI KSVQVSPALAGFLGM ++SR+EAVKQIWSYIKLNNLQNP +KRQINCDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKSS 144
            IFDGRE VGFLEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGFLEIGKLLSPHFVKSS 146

BLAST of Tan0010921 vs. NCBI nr
Match: XP_023514456.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 6.0e-57
Identity = 123/146 (84.25%), Postives = 130/146 (89.04%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAS---TSGKKSEAGEKKE 60
           MASGL+NGT+LFR CRTLLDSLKS +QAYSSAAA+SPKGKLKAS    S K SEAGEKKE
Sbjct: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
           VNRS GIFKSVQVSPALAGFLGM ++SR EAVKQIWSYIKLNNLQNP +KRQINCDEKLK
Sbjct: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKSS 144
            IFDGRE VG LEIGKLLS HFVKSS
Sbjct: 176 AIFDGRENVGILEIGKLLSAHFVKSS 201

BLAST of Tan0010921 vs. NCBI nr
Match: XP_023000111.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 7.8e-57
Identity = 122/146 (83.56%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAS---TSGKKSEAGEKKE 60
           MASGL+NGT+LFR CRTLLDSLKS +QAYSSAAA+SPKG+LKAS    + KKSEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            NRS GIFKSVQVSPALAGFLGM ++SRSEAVKQIWSYIKLN+LQNP +KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKSS 144
            IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

BLAST of Tan0010921 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-56
Identity = 122/146 (83.56%), Postives = 130/146 (89.04%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAS---TSGKKSEAGEKKE 60
           MASGL+NGT+LFR CRTLLDSLKS +QAYSSAAA+SPKG+LKAS    S KKSEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            NRS GI KSVQVSPALAGFLGM ++SR EAVKQIWSYIKLNNLQNP +KRQINCDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKSS 144
            IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

BLAST of Tan0010921 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 123/146 (84.25%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAS---TSGKKSEAGEKKE 60
           MASGL+NGT+LFR CRTLLDSLKS +QAYSSAAA+SPKG+LKAS    S KKSEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            NRS GIFKSVQVSPALAGFLGM ++SRSEAVKQIWSYIKLN+LQNP +KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKSS 144
            IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

BLAST of Tan0010921 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.8e-57
Identity = 122/146 (83.56%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAS---TSGKKSEAGEKKE 60
           MASGL+NGT+LFR CRTLLDSLKS +QAYSSAAA+SPKG+LKAS    + KKSEAGEKKE
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            NRS GIFKSVQVSPALAGFLGM ++SRSEAVKQIWSYIKLN+LQNP +KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKSS 144
            IFDGRE VG LEIGKLLSPHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

BLAST of Tan0010921 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.9e-46
Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLK---ASTSGKKSEAGEKKE 60
           MASGLSNGT+ FR C+TLLDSLK  +QAYSS  A+S K KLK   A+ SG+KS+A  K++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            N S GI KS++VSP LAGFLG  + SR++A+KQIWSYIKLNNLQN TDKRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKS 143
            IF GREKVG LEI K LSPHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

BLAST of Tan0010921 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.9e-46
Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLK---ASTSGKKSEAGEKKE 60
           MASGLSNGT+ FR C+TLLDSLK  +QAYSS  A+S K KLK   A+ SG+KS+A  K++
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            N S GI KS++VSP LAGFLG  + SR++A+KQIWSYIKLNNLQN TDKRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKS 143
            IF GREKVG LEI K LSPHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

BLAST of Tan0010921 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.5e-42
Identity = 98/145 (67.59%), Postives = 110/145 (75.86%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKAST---SGKKSEAGEKKE 60
           MASGLSNGT+ F+ CRTLLDSLKS +QAYSS   +S K  LK ST   SG+KS+   KK 
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  VNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLK 120
            N S G+ K+ +VSP LAGFLG  + +R+EAVKQIW YIKLNNLQNPTDKRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 TIFDGREKVGFLEIGKLLSPHFVKS 143
            IF GREKVG LEI K LS HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

BLAST of Tan0010921 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 7.4e-29
Identity = 69/136 (50.74%), Postives = 90/136 (66.18%), Query Frame = 0

Query: 11  LFRACRTLLDSLKSPSQAYSSAAAI---SPKGKLKASTSGKKSEAGEKKEVNRSSGIFKS 70
           +FR  R+LL      + +  SA +    + K K KA    K       K+  RS+GIFK 
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKV 67

Query: 71  VQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLKTIFDGREKVG 130
             VSP LA FLG  +TSR++A+K IW+YIK ++LQNP DKR+I CDE LK IF+G++KVG
Sbjct: 68  TPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVG 127

Query: 131 FLEIGKLLSPHFVKSS 144
           FLEI KLLSPHFVK++
Sbjct: 128 FLEISKLLSPHFVKTA 143

BLAST of Tan0010921 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-24
Identity = 63/135 (46.67%), Postives = 79/135 (58.52%), Query Frame = 0

Query: 9   TKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKASTSGKKSEAGEKKEVNRSSGIFKSV 68
           +++F ACR L+                    K  +ST  K    G        +GI K V
Sbjct: 2   SRVFGACRVLM-------------------AKAASSTGAKTGRQG--------TGILKVV 61

Query: 69  QVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLKTIFDGREKVGF 128
            VS  LA F+G  + SR+ AVK+IW YIKLNNLQNP +KR+I CDE+LKTIF G++ VGF
Sbjct: 62  PVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGF 109

Query: 129 LEIGKLLSPHFVKSS 144
           LEI KLLS HF KS+
Sbjct: 122 LEISKLLSQHFPKSA 109

BLAST of Tan0010921 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-23
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 42  KASTSGKKSEAGEKKEVNRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNL 101
           KA+T    + AGE K      GIFK+  VS  LA F G  + +R  A+K++W Y+KL+NL
Sbjct: 17  KAATVEAVTVAGEGK------GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNL 76

Query: 102 QNPTDKRQINCDEKLKTIFDGREKVGFLEIGKLLSPHFVKS 143
           QNP +K++I+CD+KLKTIFDG++KVG  EI KLLSPHF KS
Sbjct: 77  QNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

BLAST of Tan0010921 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-20
Identity = 55/124 (44.35%), Postives = 79/124 (63.71%), Query Frame = 0

Query: 21  SLKSPSQAYSSAA-AISPKGKL---KASTSGKKSEAGEKKEVNRSSGIFKSVQVSPALAG 80
           S ++PS   SS   A  P  KL   +A TS  +S            GI K   VSP +  
Sbjct: 18  SFRNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQD 77

Query: 81  FLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLKTIFDGREKVGFLEIGKLLS 140
            + +P+ +R++A+K+IW+YIK ++LQ+P +KR+I CDEKLK IF+GR++VGFLEI KL+ 
Sbjct: 78  IVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIG 137

BLAST of Tan0010921 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 57/142 (40.14%), Postives = 85/142 (59.86%), Query Frame = 0

Query: 1   MASGLSNGTKLFRACRTLLDSLKSPSQAYSSAAAISPKGKLKASTS--GKKSEAGEKKEV 60
           ++SG+ + T L      L  S+ SPS    S    +    ++A TS     S+     + 
Sbjct: 3   LSSGIFSTTFLCVDTAPLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKT 62

Query: 61  NRSSGIFKSVQVSPALAGFLGMPQTSRSEAVKQIWSYIKLNNLQNPTDKRQINCDEKLKT 120
               GI K   VS A+   +G+P+  R++A+K+IW+YIK ++LQ+P +KR I CDEKLK 
Sbjct: 63  REPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKK 122

Query: 121 IFDGREKVGFLEIGKLLSPHFV 141
           IF+G+E+VGFLEI KL+ PHF+
Sbjct: 123 IFEGKERVGFLEIAKLIGPHFL 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O745031.0e-1143.33Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
Q050247.5e-1038.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ... [more]
Q087479.7e-1035.58Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
Q9P7S36.5e-0635.29SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ... [more]
Q6STE55.5e-0543.40SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami... [more]
Match NameE-valueIdentityDescription
XP_023000110.13.5e-5784.25upstream activation factor subunit spp27-like [Cucurbita maxima][more]
KAG6593744.13.5e-5783.56hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023514456.16.0e-5784.25upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo][more]
XP_023000111.17.8e-5783.56upstream activation factor subunit spp27-like [Cucurbita maxima][more]
KAG6593745.11.7e-5683.56hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1KHF51.7e-5784.25upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1KEZ23.8e-5783.56upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A5D3DMJ23.9e-4669.66Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00... [more]
A0A1S3CBA03.9e-4669.66protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1[more]
A0A0A0KCY94.5e-4267.59SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT3G03590.17.4e-2950.74SWIB/MDM2 domain superfamily protein [more]
AT2G35605.15.5e-2446.67SWIB/MDM2 domain superfamily protein [more]
AT1G31760.12.7e-2354.46SWIB/MDM2 domain superfamily protein [more]
AT2G14880.13.7e-2044.35SWIB/MDM2 domain superfamily protein [more]
AT4G34290.11.4e-1940.14SWIB/MDM2 domain superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 64..143
e-value: 1.6E-29
score: 114.1
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 58..143
e-value: 5.2E-29
score: 102.1
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 61..141
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 67..139
e-value: 1.3E-30
score: 105.0
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 63..141
score: 22.171581
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..58
NoneNo IPR availablePANTHERPTHR13844:SF67PROTEIN TRI1coord: 7..142
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 7..142
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 68..139
e-value: 3.87203E-35
score: 114.563

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010921.1Tan0010921.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus