Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCTTTCTCTATCTCTCTTCATATTAGGAAGCAAATTAGCCCACGCAAATGAGGTCCATCCACTCATTCCGATCAAGAAAACCAGCCACCTCCATTTCCAATCTCAAACCAACAAGAAAGAGAAGACTAAAGCTTCTTCACCTCCCAAAACATCCCTCCTCCTCCGCCATCTCCGCCGTTTCCACCACCGGAACCGCCCCCTCCGCCGCCATGCACAAGAGGCTGAGAGATCTGCAGAGGCTGGTCCCCGGCCACACCCATGAAACTGACCTCAACCACTTGTTTCAAAGAACTGCTGATTATATCTTCGCTTTACAACTTAAGCTCAACGTCCTTAAAGATCTCACTTCTCTTTATGGCCTTTGAGTCATTTCCATATTATTATTATTTCAATTAGGTTCTTTTGTATTCTATATATGTTTACTTCTATATATATATATAAAAATGTTATATTTATGCAATTATTGTTGTTGTAAATGTAATATAATACCCTTTTATCTTACCACCTTCATTCTCTA
mRNA sequence
CTTTCTTTCTCTATCTCTCTTCATATTAGGAAGCAAATTAGCCCACGCAAATGAGGTCCATCCACTCATTCCGATCAAGAAAACCAGCCACCTCCATTTCCAATCTCAAACCAACAAGAAAGAGAAGACTAAAGCTTCTTCACCTCCCAAAACATCCCTCCTCCTCCGCCATCTCCGCCGTTTCCACCACCGGAACCGCCCCCTCCGCCGCCATGCACAAGAGGCTGAGAGATCTGCAGAGGCTGGTCCCCGGCCACACCCATGAAACTGACCTCAACCACTTGTTTCAAAGAACTGCTGATTATATCTTCGCTTTACAACTTAAGCTCAACGTCCTTAAAGATCTCACTTCTCTTTATGGCCTTTGAGTCATTTCCATATTATTATTATTTCAATTAGGTTCTTTTGTATTCTATATATGTTTACTTCTATATATATATATAAAAATGTTATATTTATGCAATTATTGTTGTTGTAAATGTAATATAATACCCTTTTATCTTACCACCTTCATTCTCTA
Coding sequence (CDS)
ATGAGGTCCATCCACTCATTCCGATCAAGAAAACCAGCCACCTCCATTTCCAATCTCAAACCAACAAGAAAGAGAAGACTAAAGCTTCTTCACCTCCCAAAACATCCCTCCTCCTCCGCCATCTCCGCCGTTTCCACCACCGGAACCGCCCCCTCCGCCGCCATGCACAAGAGGCTGAGAGATCTGCAGAGGCTGGTCCCCGGCCACACCCATGAAACTGACCTCAACCACTTGTTTCAAAGAACTGCTGATTATATCTTCGCTTTACAACTTAAGCTCAACGTCCTTAAAGATCTCACTTCTCTTTATGGCCTTTGA
Protein sequence
MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLRDLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL
Homology
BLAST of Tan0008593 vs. ExPASy Swiss-Prot
Match:
O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)
HSP 1 Score: 45.4 bits (106), Expect = 4.5e-04
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 0
Query: 51 PSAAMHKRLRDLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSL 103
P A+H+R++ L+ LVP L+ LF++TADYI AL++K+ V++ + +
Sbjct: 44 PCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQV 95
BLAST of Tan0008593 vs. NCBI nr
Match:
KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])
HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 0
Query: 1 MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
MRSIHSFRSR+ AT+IS LKP+R+RR+KLLHLPKH SSS +SA +T T PSAAMHKRLR
Sbjct: 59 MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSA-TTNRTTPSAAMHKRLR 118
Query: 61 DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
+LQRLVPGHTHET+LNHLFQRTADYI ALQLKLN+LKDLTS YGL
Sbjct: 119 NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162
BLAST of Tan0008593 vs. NCBI nr
Match:
KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 161.8 bits (408), Expect = 3.3e-36
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 0
Query: 1 MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
MRSIHSFR R+ ATS +NLKPTR+RRLKL+HLPK+ +SS+ + + TGT PS AMHKRLR
Sbjct: 1 MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
Query: 61 DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
+LQRLVPGH H+TDLNHLFQRTADYI ALQLKLN+LKDLTS YGL
Sbjct: 61 NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
BLAST of Tan0008593 vs. ExPASy TrEMBL
Match:
A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 8.4e-38
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 0
Query: 1 MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
MRSIHSFRSR+ AT+IS LKP+R+RR+KLLHLPKH SSS +SA +T T PSAAMHKRLR
Sbjct: 1 MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSA-TTNRTTPSAAMHKRLR 60
Query: 61 DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
+LQRLVPGHTHET+LNHLFQRTADYI ALQLKLN+LKDLTS YGL
Sbjct: 61 NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104
BLAST of Tan0008593 vs. ExPASy TrEMBL
Match:
A0A7N0RGC2 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 0
Query: 1 MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
M S+ S+ R+ + K R LK P+ P T +P+ + +RLR
Sbjct: 1 MTSVKSYDVRRRS------KKQRVAVLKFSSPPRRP----------TPPSPAVVLQRRLR 60
Query: 61 DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
+LQR+VPG +H D+ LF+RTADYI L+ K+ L++L+S GL
Sbjct: 61 ELQRVVPGSSH--DMGALFRRTADYISMLETKVAALRELSSTLGL 87
BLAST of Tan0008593 vs. ExPASy TrEMBL
Match:
A0A7N2L281 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 34/83 (40.96%), Postives = 57/83 (68.67%), Query Frame = 0
Query: 23 RKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLRDLQRLVPGHTHETDLNHLFQRT 82
+K+RL+ L L K+ +AV+TT + ++LR LQ+++PG +E DL LF R
Sbjct: 19 KKKRLR-LSLVKNS-----AAVNTT-------IQRKLRQLQKIIPG-CNEMDLETLFPRI 78
Query: 83 ADYIFALQLKLNVLKDLTSLYGL 106
A+YI +LQ+K+N+LK++++LYG+
Sbjct: 79 ANYILSLQVKVNILKNISTLYGV 87
BLAST of Tan0008593 vs. ExPASy TrEMBL
Match:
A0A1R3KLV4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 6.1e-04
Identity = 33/105 (31.43%), Postives = 64/105 (60.95%), Query Frame = 0
Query: 1 MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
MRS S R R+ L RK R++ ++L P+++ ++ + ++ ++L
Sbjct: 1 MRSKRSPRGRRKVL----LTRGRKLRIRQINLSNLPNNN-----NSVSESLRTSVERKLE 60
Query: 61 DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
+LQR++P +E +++ LFQ TADYIF L+ K+++L++L++ YG+
Sbjct: 61 ELQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96
BLAST of Tan0008593 vs. TAIR 10
Match:
AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )
HSP 1 Score: 45.4 bits (106), Expect = 3.2e-05
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 0
Query: 51 PSAAMHKRLRDLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSL 103
P A+H+R++ L+ LVP L+ LF++TADYI AL++K+ V++ + +
Sbjct: 44 PCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQV 95
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O22901 | 4.5e-04 | 38.46 | Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAE8651649.1 | 1.7e-37 | 80.95 | hypothetical protein Csa_021260, partial [Cucumis sativus] | [more] |
KAG6598843.1 | 3.3e-36 | 76.19 | Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LJ57 | 8.4e-38 | 80.95 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1 | [more] |
A0A7N0RGC2 | 3.6e-04 | 36.19 | Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1 | [more] |
A0A7N2L281 | 3.6e-04 | 40.96 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A1R3KLV4 | 6.1e-04 | 31.43 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G47270.1 | 3.2e-05 | 38.46 | sequence-specific DNA binding transcription factors;transcription regulators | [more] |