Tan0008593.1 (mRNA) Snake gourd v1

Overview


Name	Tan0008593.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	sequence-specific DNA binding transcription factors;transcription regulators
Location	LG08: 8453900 .. 8454419 (+)
Sequence length	520
RNA-Seq Expression	Tan0008593.1
Synteny	Tan0008593.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCTTTCTCTATCTCTCTTCATATTAGGAAGCAAATTAGCCCACGCAAATGAGGTCCATCCACTCATTCCGATCAAGAAAACCAGCCACCTCCATTTCCAATCTCAAACCAACAAGAAAGAGAAGACTAAAGCTTCTTCACCTCCCAAAACATCCCTCCTCCTCCGCCATCTCCGCCGTTTCCACCACCGGAACCGCCCCCTCCGCCGCCATGCACAAGAGGCTGAGAGATCTGCAGAGGCTGGTCCCCGGCCACACCCATGAAACTGACCTCAACCACTTGTTTCAAAGAACTGCTGATTATATCTTCGCTTTACAACTTAAGCTCAACGTCCTTAAAGATCTCACTTCTCTTTATGGCCTTTGAGTCATTTCCATATTATTATTATTTCAATTAGGTTCTTTTGTATTCTATATATGTTTACTTCTATATATATATATAAAAATGTTATATTTATGCAATTATTGTTGTTGTAAATGTAATATAATACCCTTTTATCTTACCACCTTCATTCTCTA

mRNA sequence

CTTTCTTTCTCTATCTCTCTTCATATTAGGAAGCAAATTAGCCCACGCAAATGAGGTCCATCCACTCATTCCGATCAAGAAAACCAGCCACCTCCATTTCCAATCTCAAACCAACAAGAAAGAGAAGACTAAAGCTTCTTCACCTCCCAAAACATCCCTCCTCCTCCGCCATCTCCGCCGTTTCCACCACCGGAACCGCCCCCTCCGCCGCCATGCACAAGAGGCTGAGAGATCTGCAGAGGCTGGTCCCCGGCCACACCCATGAAACTGACCTCAACCACTTGTTTCAAAGAACTGCTGATTATATCTTCGCTTTACAACTTAAGCTCAACGTCCTTAAAGATCTCACTTCTCTTTATGGCCTTTGAGTCATTTCCATATTATTATTATTTCAATTAGGTTCTTTTGTATTCTATATATGTTTACTTCTATATATATATATAAAAATGTTATATTTATGCAATTATTGTTGTTGTAAATGTAATATAATACCCTTTTATCTTACCACCTTCATTCTCTA

Coding sequence (CDS)

ATGAGGTCCATCCACTCATTCCGATCAAGAAAACCAGCCACCTCCATTTCCAATCTCAAACCAACAAGAAAGAGAAGACTAAAGCTTCTTCACCTCCCAAAACATCCCTCCTCCTCCGCCATCTCCGCCGTTTCCACCACCGGAACCGCCCCCTCCGCCGCCATGCACAAGAGGCTGAGAGATCTGCAGAGGCTGGTCCCCGGCCACACCCATGAAACTGACCTCAACCACTTGTTTCAAAGAACTGCTGATTATATCTTCGCTTTACAACTTAAGCTCAACGTCCTTAAAGATCTCACTTCTCTTTATGGCCTTTGA

Protein sequence

MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLRDLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL

Homology

[Close]

BLAST of Tan0008593.1 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.5e-04
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 51  PSAAMHKRLRDLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSL 103
           P  A+H+R++ L+ LVP       L+ LF++TADYI AL++K+ V++ +  +
Sbjct: 44  PCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQV 95

[Close]

BLAST of Tan0008593.1 vs. NCBI nr
Match: KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
           MRSIHSFRSR+ AT+IS LKP+R+RR+KLLHLPKH SSS +SA +T  T PSAAMHKRLR
Sbjct: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSA-TTNRTTPSAAMHKRLR 118

Query: 61  DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
           +LQRLVPGHTHET+LNHLFQRTADYI ALQLKLN+LKDLTS YGL
Sbjct: 119 NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162

[Close]

BLAST of Tan0008593.1 vs. NCBI nr
Match: KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-36
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
           MRSIHSFR R+ ATS +NLKPTR+RRLKL+HLPK+ +SS+  + + TGT PS AMHKRLR
Sbjct: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60

Query: 61  DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
           +LQRLVPGH H+TDLNHLFQRTADYI ALQLKLN+LKDLTS YGL
Sbjct: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105

[Close]

BLAST of Tan0008593.1 vs. ExPASy TrEMBL
Match: A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.4e-38
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
           MRSIHSFRSR+ AT+IS LKP+R+RR+KLLHLPKH SSS +SA +T  T PSAAMHKRLR
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSA-TTNRTTPSAAMHKRLR 60

Query: 61  DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
           +LQRLVPGHTHET+LNHLFQRTADYI ALQLKLN+LKDLTS YGL
Sbjct: 61  NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of Tan0008593.1 vs. ExPASy TrEMBL
Match: A0A7N0RGC2 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 1   MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
           M S+ S+  R+ +      K  R   LK    P+ P          T  +P+  + +RLR
Sbjct: 1   MTSVKSYDVRRRS------KKQRVAVLKFSSPPRRP----------TPPSPAVVLQRRLR 60

Query: 61  DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
           +LQR+VPG +H  D+  LF+RTADYI  L+ K+  L++L+S  GL
Sbjct: 61  ELQRVVPGSSH--DMGALFRRTADYISMLETKVAALRELSSTLGL 87

[Close]

BLAST of Tan0008593.1 vs. ExPASy TrEMBL
Match: A0A7N2L281 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 34/83 (40.96%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 23  RKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLRDLQRLVPGHTHETDLNHLFQRT 82
           +K+RL+ L L K+      +AV+TT       + ++LR LQ+++PG  +E DL  LF R 
Sbjct: 19  KKKRLR-LSLVKNS-----AAVNTT-------IQRKLRQLQKIIPG-CNEMDLETLFPRI 78

Query: 83  ADYIFALQLKLNVLKDLTSLYGL 106
           A+YI +LQ+K+N+LK++++LYG+
Sbjct: 79  ANYILSLQVKVNILKNISTLYGV 87

[Close]

BLAST of Tan0008593.1 vs. ExPASy TrEMBL
Match: A0A1R3KLV4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.1e-04
Identity = 33/105 (31.43%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 1   MRSIHSFRSRKPATSISNLKPTRKRRLKLLHLPKHPSSSAISAVSTTGTAPSAAMHKRLR 60
           MRS  S R R+       L   RK R++ ++L   P+++     ++   +   ++ ++L 
Sbjct: 1   MRSKRSPRGRRKVL----LTRGRKLRIRQINLSNLPNNN-----NSVSESLRTSVERKLE 60

Query: 61  DLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSLYGL 106
           +LQR++P   +E +++ LFQ TADYIF L+ K+++L++L++ YG+
Sbjct: 61  ELQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

[Close]

BLAST of Tan0008593.1 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-05
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 51  PSAAMHKRLRDLQRLVPGHTHETDLNHLFQRTADYIFALQLKLNVLKDLTSL 103
           P  A+H+R++ L+ LVP       L+ LF++TADYI AL++K+ V++ +  +
Sbjct: 44  PCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQV 95

The following BLAST results are available for this feature:

BLAST of Tan0008593.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	4.5e-04	38.46	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of Tan0008593.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651649.1	1.7e-37	80.95	hypothetical protein Csa_021260, partial [Cucumis sativus]	[more]
KAG6598843.1	3.3e-36	76.19	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Tan0008593.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ57	8.4e-38	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1	[more]
A0A7N0RGC2	3.6e-04	36.19	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A7N2L281	3.6e-04	40.96	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A1R3KLV4	6.1e-04	31.43	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1	[more]

BLAST of Tan0008593.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	3.2e-05	38.46	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 14..103
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 14..103
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 54..100 e-value: 8.78324E-14 score: 58.788
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 55..98

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0008593	Tan0008593	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008593.1-five_prime_utr	Tan0008593.1-five_prime_utr-LG08:8453900..8453949	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008593.1-exon	Tan0008593.1-exon-LG08:8453900..8454419	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008593.1-cds	Tan0008593.1-cds-LG08:8453950..8454267	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008593.1-three_prime_utr	Tan0008593.1-three_prime_utr-LG08:8454268..8454419	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0008593.1	Tan0008593.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity