Tan0000845 (gene) Snake gourd v1

Overview
NameTan0000845
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSHSP domain-containing protein
LocationLG11: 8115375 .. 8117857 (+)
RNA-Seq ExpressionTan0000845
SyntenyTan0000845
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCATATATAAAAGTAAAAGTGCTTCTTCTCTTGCATATAAATCATCACCAAAACTATAGCCATCTAAGTCATTATTTGGTGGTGAATTGAAGCGCTTTGAAGAAGTGATTTTGCCATTTTGTTCACGTTTTTTGAACAGAAGCGAAGAAAGATGTCGAGTCCGAGTATGAGGCAAAGTTGGAGAAATGTAATTCAATCAAATCAGCCGTTTTCTCCAGAAAAAAGTTGGGAAGAAGGGAACGATGGCAGCCATAAGTTGAGCATGAAACTCACAGGTAAATTTAATTACCCTCAATTATAAATAAATAAATAAATTACAAAAATATCCTTATTTTTTCAAAAGTTACGATTTTATCTTCACCCTTCATAAACCTCTCAAAACCACCTTTGAAGTAGAAATTTATTAGAGACCGTAGTTTTTTTTTCCTCTTTAAACCGACTGACTGGTTGGTTCAGTCGGTTTATATATATATATATTATTTATAATTATTGCTTAATATATTTGTGAGATATAATATCAATATAAGAAAATCTATATGATTTTTGTTTTTTTTAATAATAATAATAATTATTATTATTTTATATATATTAAAAAAAAATCGGTCAGTTTGGTCGGGTGGGGCTTTTGCCCCAAACCGACTCTGACCGAAAAGACACAAAAATCGACCGACCGACCTTGGTTCAGCTGATTTCGATCGGTCGAATCAATTTTTGGTCTTTTTTTGCTCACCCTTACCTAAAACGATGTGACAGTAACTTGGATGCTTGTAAGTTTAAAAGACCAGGGGCATGCCGGTCTAATGATTTTTTTCTACTTCAATGGTAGTTTTGAAACATTTTAGGAAAGGTTGAGGGTAATGTTGCAACTCATTGAAATATTTTAAAAAAGGTTAAGGGTAATATTGCAACTTTTAAAACAATATGAGTATTTTTTTATATATATATTTTAGCAATTTAATTAAAATCTAGGTTAAAATACCATATTAGTCTCTTTCAATAAGTATAAAATTGGTCTCTATTGTTATTTTATTATTAACTATTTGTCTTCACTCCTATACATTTTTTGAAAATACATTCACTTGATGTCTTTTTAAAATTATTATTATTATTTAACTAATTTCAATAAAAAGTAACTTCAAACTACCAATAGAGACAATTTTTAAAATTTATAAATACAAGGGTAAAATTAAAACATTTGAGGTCATGTTCGATAACCATTTGGTTTTTTATTTTTTAAAATTAATCCAAAAAATACTATTTTTACCCATGAATTTCTATGTTTTCTTGCATACTTTGTACATATGTTTTCAAAAACCAAGCTAAGTTAAAAAAAAATAATAATAAATCAAAAACTTATTTTTGTTTTTGAAATTTGGCTAGAACCTTAAATGACACCTCAAAAAGGATGAAAATCATTGTAGAGAATATGAAAAAAACAAAAAAAAAAATTGGGGGAAAAACAAGCATAATTTTCAAAACAAAAAATCAAATTATTATCAAACGGTTCTAAAAGTTCACGGACTAAAGTGAATTGAAGTGAAACCCAAAGGAGAGAGAGAGACAAAATTATATTTATTTACACCTAAAATGTAATTAAATTAATTAGATTTAATATTTAATTAATGACTTGCAATTGATTTTTGTATAGGTTTTTCAAAGGATCAACTACGAATAAACTTGAATACAAGATCAAAGACTCTTATAGTTACGGGAATGAAAACAGATGGCTTCAATGTGACTCGTTTAAATGAACGCATTCAAATTAAAGAAGCATGTTCATTAGATGGAGTCTCAGCAAAATTATTTTCTGATCATACTCTTACTGTTACATTCCCCAAAAACCAATAAATTAAATTAATCTTCATTTTATTTCTATCCAAATCAAAAAATTTACTTTGTTTAAATTAGTGAATAAATATCAACTTCTATATATGTGAGTTGGTGTATAAATTTGTTTTCTAAAGTTGTAATCAAATTGTGGGTAAAGGATCGATATCGATCAATGATGTTATATTGTGTACCAATGAAACCACGTTATCTAATATTATCAATCGACTCGTGTGGTTGTGTTTGTGGAATGAAGAAAAACCTATATTTGTTTGTTGTTTTTGAAATTGGTCACGCGAGATTTAATTTTACTTGAACAAATAATAGTATTGTGTATTTGTTTGTTATGAATAAAGTGAACCTTTATATATCTCTACATGCGAGAAACTATTTGTTGAAACTTTTCTTTGGGAATCGAAGGGTGCTTTTGATTGGGGATTCAAAAACAGAATTTTGAAAACAATAGATTTAATGGAAAAAAAAAAAGATATGGTTGTGTTTTATATGTTTCATTGTTTTTTTTAATGTATGTATTTAGTGGTAGATTTTGAATCGGAAAACAAATAGAAACATATAGATGTTTTTTTCTTTTTTTCTTTTTTGTCAAAGAGAGCATAGTTTAATTGACATCTCGAATGTATTAATGAGTAATGAC

mRNA sequence

GGCATATATAAAAGTAAAAGTGCTTCTTCTCTTGCATATAAATCATCACCAAAACTATAGCCATCTAAGTCATTATTTGGTGGTGAATTGAAGCGCTTTGAAGAAGTGATTTTGCCATTTTGTTCACGTTTTTTGAACAGAAGCGAAGAAAGATGTCGAGTCCGAGTATGAGGCAAAGTTGGAGAAATGTAATTCAATCAAATCAGCCGTTTTCTCCAGAAAAAAGTTGGGAAGAAGGGAACGATGGCAGCCATAAGTTGAGCATGAAACTCACAGGTTTTTCAAAGGATCAACTACGAATAAACTTGAATACAAGATCAAAGACTCTTATAGTTACGGGAATGAAAACAGATGGCTTCAATGTGACTCGTTTAAATGAACGCATTCAAATTAAAGAAGCATGTTCATTAGATGGAGTCTCAGCAAAATTATTTTCTGATCATACTCTTACTGTTACATTCCCCAAAAACCAATAAATTAAATTAATCTTCATTTTATTTCTATCCAAATCAAAAAATTTACTTTGTTTAAATTAGTGAATAAATATCAACTTCTATATATGTGAGTTGGTGTATAAATTTGTTTTCTAAAGTTGTAATCAAATTGTGGGTAAAGGATCGATATCGATCAATGATGTTATATTGTGTACCAATGAAACCACGTTATCTAATATTATCAATCGACTCGTGTGGTTGTGTTTGTGGAATGAAGAAAAACCTATATTTGTTTGTTGTTTTTGAAATTGGTCACGCGAGATTTAATTTTACTTGAACAAATAATAGTATTGTGTATTTGTTTGTTATGAATAAAGTGAACCTTTATATATCTCTACATGCGAGAAACTATTTGTTGAAACTTTTCTTTGGGAATCGAAGGGTGCTTTTGATTGGGGATTCAAAAACAGAATTTTGAAAACAATAGATTTAATGGAAAAAAAAAAAGATATGGTTGTGTTTTATATGTTTCATTGTTTTTTTTAATGTATGTATTTAGTGGTAGATTTTGAATCGGAAAACAAATAGAAACATATAGATGTTTTTTTCTTTTTTTCTTTTTTGTCAAAGAGAGCATAGTTTAATTGACATCTCGAATGTATTAATGAGTAATGAC

Coding sequence (CDS)

ATGTCGAGTCCGAGTATGAGGCAAAGTTGGAGAAATGTAATTCAATCAAATCAGCCGTTTTCTCCAGAAAAAAGTTGGGAAGAAGGGAACGATGGCAGCCATAAGTTGAGCATGAAACTCACAGGTTTTTCAAAGGATCAACTACGAATAAACTTGAATACAAGATCAAAGACTCTTATAGTTACGGGAATGAAAACAGATGGCTTCAATGTGACTCGTTTAAATGAACGCATTCAAATTAAAGAAGCATGTTCATTAGATGGAGTCTCAGCAAAATTATTTTCTGATCATACTCTTACTGTTACATTCCCCAAAAACCAATAA

Protein sequence

MSSPSMRQSWRNVIQSNQPFSPEKSWEEGNDGSHKLSMKLTGFSKDQLRINLNTRSKTLIVTGMKTDGFNVTRLNERIQIKEACSLDGVSAKLFSDHTLTVTFPKNQ
Homology
BLAST of Tan0000845 vs. NCBI nr
Match: KAE8646641.1 (hypothetical protein Csa_005322 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 5.2e-21
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MSSPSMRQSWRNVI-QSNQPFSPEKSWEEGND-GSHKLSMKLTGFSKDQLRINLNTRSKT 60
           MSS  + Q WRNV+ Q NQ F P  ++EE  +      SMKL GFSKD+LRINLNTR++ 
Sbjct: 44  MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 103

Query: 61  LIVTGMKTDG-FNVTRLNERIQIKEACSLDGVSAKLFSDHTLTVTFPKNQ 108
           ++VTG K+DG FN+TRLNER+ IKE C L+GV AKL +D TL VTF K +
Sbjct: 104 IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSND-TLIVTFEKEK 152

BLAST of Tan0000845 vs. NCBI nr
Match: KAG7016359.1 (hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 0

Query: 1   MSSPSMRQSWRNVIQSNQPFSPEKSWEEGNDGSHKLSMKLTGFSKDQLRINLNTRSKTLI 60
           MSS  + Q WR+V +S+QPFSP+  W E  + S  LSMKL GF K++L+I LN  ++TL 
Sbjct: 1   MSSQIVEQDWRDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNRLQITLNAATRTLT 60

Query: 61  VTGMKTDG-FNVTRLNERIQIKEACSLDGVSAKLFSDHTLTVTFPKNQ 108
           VTG K DG FN+ RLNERI I + CSLDGV A+L  DHTL VTF K +
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARL-HDHTLFVTFSKKK 106

BLAST of Tan0000845 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 1   MSSPSMRQSWRNVIQSNQPFSPEKSWEEGNDGSHKLSMKLTGFSKDQLRINLNTRSKTLI 60
           MSS  + Q W +V +S+QPFSP+  W E  + S  LSMKL GF K+QL+I LN  ++TL 
Sbjct: 1   MSSQIVEQDWGDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNQLQITLNAATRTLT 60

Query: 61  VTGMKTDG-FNVTRLNERIQIKEACSLDGVSAKLFSDHTLTVTFPKNQ 108
           VTG K DG FN+ RLNERI I + CSLDGV A+L  D TL VTF K +
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARL-HDQTLFVTFSKKK 106

BLAST of Tan0000845 vs. NCBI nr
Match: KAG6578833.1 (Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 1  MSSPSMRQSWRNVIQSNQPFSPEKSWEEGNDGSHKLSMKLTGFSKDQLRINLNTRSKTLI 60
          MSS  + Q WR+V +S+QPFSP+  W E  + S  LSMKL GF K++L+I LN  ++TL 
Sbjct: 1  MSSQIVEQDWRDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNRLQITLNAATRTLT 60

Query: 61 VTGMKTD 68
          VTG K D
Sbjct: 61 VTGQKQD 66

BLAST of Tan0000845 vs. NCBI nr
Match: KAG6602241.1 (hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 32/99 (32.32%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 10  WRNVIQSNQPFSPEKSW---EEGNDGSHKLSMKLTGFSKDQLRINLNTRSKTLIVTGMKT 69
           W  + Q  + + P   W   +E N    ++ +  +G S++QL+I+++   +T+ +   K 
Sbjct: 8   WDEMDQQKENYRPNVEWKERKETNKDYFEMIIDFSGCSRNQLQISMSRELRTIDIMTTKK 67

Query: 70  DGFNVTRLNERIQIKEACSLDGVSAKLFSDHTLTVTFPK 106
           +G+N+ R+NE I I+  CSLD V A  F ++ L +TFPK
Sbjct: 68  EGYNIARVNETIPIRPECSLDNVYAS-FVNNDLIITFPK 105

BLAST of Tan0000845 vs. ExPASy TrEMBL
Match: A0A0A0KB53 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.5e-21
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MSSPSMRQSWRNVI-QSNQPFSPEKSWEEGND-GSHKLSMKLTGFSKDQLRINLNTRSKT 60
           MSS  + Q WRNV+ Q NQ F P  ++EE  +      SMKL GFSKD+LRINLNTR++ 
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 60

Query: 61  LIVTGMKTDG-FNVTRLNERIQIKEACSLDGVSAKLFSDHTLTVTFPKNQ 108
           ++VTG K+DG FN+TRLNER+ IKE C L+GV AKL +D TL VTF K +
Sbjct: 61  IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSND-TLIVTFEKEK 109

BLAST of Tan0000845 vs. ExPASy TrEMBL
Match: A0A6J1FGX8 (uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC111445297 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 1   MSSPSMRQSWRNVIQSNQPFSPEKSWEEGNDGSHKLSMKLTGFSKDQLRINLNTRSKTLI 60
           MSS  + Q W +V +S+QPFSP+  W E  + S  LSMKL GF K+QL+I LN  ++TL 
Sbjct: 1   MSSQIVEQDWGDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNQLQITLNAATRTLT 60

Query: 61  VTGMKTDG-FNVTRLNERIQIKEACSLDGVSAKLFSDHTLTVTFPKNQ 108
           VTG K DG FN+ RLNERI I + CSLDGV A+L  D TL VTF K +
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARL-HDQTLFVTFSKKK 106

BLAST of Tan0000845 vs. TAIR 10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 9.5e-05
Identity = 26/89 (29.21%), Postives = 49/89 (55.06%), Query Frame = 0

Query: 18  QPFSPEKSWEEGNDGSHKLSMKLTGFSKDQLRINLNTRSKTLIVTGMK-TDGFNVTRLNE 77
           + F P+  W++  + +  L++ LTGF+K+Q+++     SK + VTG +       +R NE
Sbjct: 17  EDFVPKSEWKDQPEAT-ILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNE 76

Query: 78  RIQIKEACSLDGVSAKLFSDHTLTVTFPK 106
              + + C +D +    F ++ LT+T PK
Sbjct: 77  VFTVPQNCLVDKIHGS-FKNNVLTITMPK 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646641.15.2e-2157.27hypothetical protein Csa_005322 [Cucumis sativus][more]
KAG7016359.11.5e-2056.48hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022939359.12.8e-1955.56uncharacterized protein LOC111445297 [Cucurbita moschata][more]
KAG6578833.12.5e-0752.24Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma... [more]
KAG6602241.13.6e-0632.32hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KB532.5e-2157.27SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 S... [more]
A0A6J1FGX81.4e-1955.56uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
Match NameE-valueIdentityDescription
AT5G04890.19.5e-0529.21HSP20-like chaperones superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 3..107
e-value: 2.4E-9
score: 38.9
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 18..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 30..105
e-value: 7.88944E-5
score: 36.3781
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 15..107
score: 10.781611

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000845.1Tan0000845.1mRNA