Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCGGAGGATGCATCGGCGTGGTGGTGGTGAGAAGAAGAGGGAGAATGGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTCATGAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTTGCCATTTGCAGACTGCTCTGATTTCCTTTTCTTCCTTGCGCTTCTTCTCCGCGACCAAGAGATGA
mRNA sequence
ATGGGAGGCGGAGGATGCATCGGCGTGGTGGTGGTGAGAAGAAGAGGGAGAATGGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTCATGAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTTGCCATTTGCAGACTGCTCTGATTTCCTTTTCTTCCTTGCGCTTCTTCTCCGCGACCAAGAGATGA
Coding sequence (CDS)
ATGGGAGGCGGAGGATGCATCGGCGTGGTGGTGGTGAGAAGAAGAGGGAGAATGGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTCATGAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTTGCCATTTGCAGACTGCTCTGATTTCCTTTTCTTCCTTGCGCTTCTTCTCCGCGACCAAGAGATGA
Protein sequence
MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRLICHLQTALISFSSLRFFSATKR
Homology
BLAST of Spg034668 vs. NCBI nr
Match:
KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 0
Query: 1 MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
MGGGG I +V+VR R RMDPV+ LLA+KVDAES+E DAEARSG+SELI EHRMLPPLV P
Sbjct: 1 MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60
Query: 61 PEELSSRSQRLICHLQTALISFSSLRFFSA 91
PEELSSRSQRLI H +TALIS S F S+
Sbjct: 61 PEELSSRSQRLIRHCKTALISLSLRSFTSS 90
BLAST of Spg034668 vs. NCBI nr
Match:
KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])
HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 0
Query: 1 MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
MGGGGCIG+VVVRRRGR+DPVV+LLADKVDAES+EGDAEAR G++ELI +H MLPP +SP
Sbjct: 1 MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60
Query: 61 PEELSSRSQRLICH 75
PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIRH 74
BLAST of Spg034668 vs. NCBI nr
Match:
KAB1208638.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella rubra])
HSP 1 Score: 84.0 bits (206), Expect = 7.7e-13
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0
Query: 18 MDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRLICH 75
M+ VVDLLAD+VD+E ++GDAEARSGV++LI +HR+LPPLV PPEELS SQ LICH
Sbjct: 1 MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICH 57
BLAST of Spg034668 vs. NCBI nr
Match:
RDX82049.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial [Mucuna pruriens])
HSP 1 Score: 78.2 bits (191), Expect = 4.2e-11
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0
Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
VRRR R++ VVDL D+V+A+ DEGDA+AR GV+ELI +HRMLPP + PPEEL R
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSRS 76
Query: 72 ICHLQTALISFSSLRFFS 90
H + +S S L F +
Sbjct: 77 HFHSSSLSLSPSLLLFIA 94
BLAST of Spg034668 vs. NCBI nr
Match:
KYP52102.1 (hypothetical protein KK1_026012, partial [Cajanus cajan])
HSP 1 Score: 78.2 bits (191), Expect = 4.2e-11
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0
Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
VRRR R++ VVDLLAD+VDA+ DEGDAE R GV++LI +HRMLPP + PEELS
Sbjct: 1 VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSRVFSLS 60
Query: 72 ICHLQTALIS 82
H +L+S
Sbjct: 61 RSHFLFSLLS 70
BLAST of Spg034668 vs. ExPASy TrEMBL
Match:
A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 0
Query: 1 MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
MGGGGCIG+VVVRRRGR+DPVV+LLADKVDAES+EGDAEAR G++ELI +H MLPP +SP
Sbjct: 1 MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60
Query: 61 PEELSSRSQRLICH 75
PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIRH 74
BLAST of Spg034668 vs. ExPASy TrEMBL
Match:
A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0
Query: 1 MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
MGGGGCIG+VVVRRR R+DPVV+LLADKVDAES+EGDAEARSGV+ELI +H MLPP +SP
Sbjct: 1 MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60
Query: 61 PEELSSRSQRLICH 75
PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74
BLAST of Spg034668 vs. ExPASy TrEMBL
Match:
A0A6A1V9T8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR7G029153 PE=3 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 3.7e-13
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0
Query: 18 MDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRLICH 75
M+ VVDLLAD+VD+E ++GDAEARSGV++LI +HR+LPPLV PPEELS SQ LICH
Sbjct: 1 MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICH 57
BLAST of Spg034668 vs. ExPASy TrEMBL
Match:
A0A151SBB2 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0
Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
VRRR R++ VVDLLAD+VDA+ DEGDAE R GV++LI +HRMLPP + PEELS
Sbjct: 1 VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSRVFSLS 60
Query: 72 ICHLQTALIS 82
H +L+S
Sbjct: 61 RSHFLFSLLS 70
BLAST of Spg034668 vs. ExPASy TrEMBL
Match:
A0A371FUN4 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens OX=157652 GN=ISPD PE=3 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0
Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
VRRR R++ VVDL D+V+A+ DEGDA+AR GV+ELI +HRMLPP + PPEEL R
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSRS 76
Query: 72 ICHLQTALISFSSLRFFS 90
H + +S S L F +
Sbjct: 77 HFHSSSLSLSPSLLLFIA 94
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6597022.1 | 1.1e-24 | 74.44 | hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0054191.1 | 3.3e-24 | 81.08 | hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150... | [more] |
| KAB1208638.1 | 7.7e-13 | 71.93 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella... | [more] |
| RDX82049.1 | 4.2e-11 | 52.56 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial... | [more] |
| KYP52102.1 | 4.2e-11 | 57.14 | hypothetical protein KK1_026012, partial [Cajanus cajan] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UKX3 | 1.6e-24 | 81.08 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0KP64 | 2.1e-24 | 82.43 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1 | [more] |
| A0A6A1V9T8 | 3.7e-13 | 71.93 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morel... | [more] |
| A0A151SBB2 | 2.0e-11 | 57.14 | Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 S... | [more] |
| A0A371FUN4 | 2.0e-11 | 52.56 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
