Spg034668.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg034668.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Location	scaffold7: 46838264 .. 46838545 (+)
Sequence length	282
RNA-Seq Expression	Spg034668.1
Synteny	Spg034668.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCGGAGGATGCATCGGCGTGGTGGTGGTGAGAAGAAGAGGGAGAATGGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTCATGAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTTGCCATTTGCAGACTGCTCTGATTTCCTTTTCTTCCTTGCGCTTCTTCTCCGCGACCAAGAGATGA

mRNA sequence

ATGGGAGGCGGAGGATGCATCGGCGTGGTGGTGGTGAGAAGAAGAGGGAGAATGGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTCATGAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTTGCCATTTGCAGACTGCTCTGATTTCCTTTTCTTCCTTGCGCTTCTTCTCCGCGACCAAGAGATGA

Coding sequence (CDS)

ATGGGAGGCGGAGGATGCATCGGCGTGGTGGTGGTGAGAAGAAGAGGGAGAATGGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTCATGAGCATCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTTGCCATTTGCAGACTGCTCTGATTTCCTTTTCTTCCTTGCGCTTCTTCTCCGCGACCAAGAGATGA

Protein sequence

MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRLICHLQTALISFSSLRFFSATKR

Homology

[Close]

BLAST of Spg034668.1 vs. NCBI nr
Match: KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 1  MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
          MGGGG I +V+VR R RMDPV+ LLA+KVDAES+E DAEARSG+SELI EHRMLPPLV P
Sbjct: 1  MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60

Query: 61 PEELSSRSQRLICHLQTALISFSSLRFFSA 91
          PEELSSRSQRLI H +TALIS S   F S+
Sbjct: 61 PEELSSRSQRLIRHCKTALISLSLRSFTSS 90

[Close]

BLAST of Spg034668.1 vs. NCBI nr
Match: KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
          MGGGGCIG+VVVRRRGR+DPVV+LLADKVDAES+EGDAEAR G++ELI +H MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLICH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Spg034668.1 vs. NCBI nr
Match: KAB1208638.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella rubra])

HSP 1 Score: 84.0 bits (206), Expect = 7.7e-13
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 18 MDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRLICH 75
          M+ VVDLLAD+VD+E ++GDAEARSGV++LI +HR+LPPLV PPEELS  SQ LICH
Sbjct: 1  MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICH 57

[Close]

BLAST of Spg034668.1 vs. NCBI nr
Match: RDX82049.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial [Mucuna pruriens])

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-11
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
          VRRR R++ VVDL  D+V+A+ DEGDA+AR GV+ELI +HRMLPP + PPEEL     R 
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSRS 76

Query: 72 ICHLQTALISFSSLRFFS 90
            H  +  +S S L F +
Sbjct: 77 HFHSSSLSLSPSLLLFIA 94

[Close]

BLAST of Spg034668.1 vs. NCBI nr
Match: KYP52102.1 (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-11
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
          VRRR R++ VVDLLAD+VDA+ DEGDAE R GV++LI +HRMLPP +  PEELS      
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSRVFSLS 60

Query: 72 ICHLQTALIS 82
            H   +L+S
Sbjct: 61 RSHFLFSLLS 70

[Close]

BLAST of Spg034668.1 vs. ExPASy TrEMBL
Match: A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
          MGGGGCIG+VVVRRRGR+DPVV+LLADKVDAES+EGDAEAR G++ELI +H MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLICH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Spg034668.1 vs. ExPASy TrEMBL
Match: A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MGGGGCIGVVVVRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSP 60
          MGGGGCIG+VVVRRR R+DPVV+LLADKVDAES+EGDAEARSGV+ELI +H MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLICH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]

BLAST of Spg034668.1 vs. ExPASy TrEMBL
Match: A0A6A1V9T8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR7G029153 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.7e-13
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 18 MDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRLICH 75
          M+ VVDLLAD+VD+E ++GDAEARSGV++LI +HR+LPPLV PPEELS  SQ LICH
Sbjct: 1  MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICH 57

[Close]

BLAST of Spg034668.1 vs. ExPASy TrEMBL
Match: A0A151SBB2 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
          VRRR R++ VVDLLAD+VDA+ DEGDAE R GV++LI +HRMLPP +  PEELS      
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSRVFSLS 60

Query: 72 ICHLQTALIS 82
            H   +L+S
Sbjct: 61 RSHFLFSLLS 70

[Close]

BLAST of Spg034668.1 vs. ExPASy TrEMBL
Match: A0A371FUN4 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens OX=157652 GN=ISPD PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 12 VRRRGRMDPVVDLLADKVDAESDEGDAEARSGVSELIHEHRMLPPLVSPPEELSSRSQRL 71
          VRRR R++ VVDL  D+V+A+ DEGDA+AR GV+ELI +HRMLPP + PPEEL     R 
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSRS 76

Query: 72 ICHLQTALISFSSLRFFS 90
            H  +  +S S L F +
Sbjct: 77 HFHSSSLSLSPSLLLFIA 94

The following BLAST results are available for this feature:

BLAST of Spg034668.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597022.1	1.1e-24	74.44	hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0054191.1	3.3e-24	81.08	hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150...	[more]
KAB1208638.1	7.7e-13	71.93	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella...	[more]
RDX82049.1	4.2e-11	52.56	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial...	[more]
KYP52102.1	4.2e-11	57.14	hypothetical protein KK1_026012, partial [Cajanus cajan]	[more]

BLAST of Spg034668.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg034668.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKX3	1.6e-24	81.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP64	2.1e-24	82.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1	[more]
A0A6A1V9T8	3.7e-13	71.93	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morel...	[more]
A0A151SBB2	2.0e-11	57.14	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 S...	[more]
A0A371FUN4	2.0e-11	52.56	4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens...	[more]

BLAST of Spg034668.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg034668	Spg034668	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg034668.1-cds	Spg034668.1-cds-scaffold7:46838264..46838545	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg034668.1	Spg034668.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0016020	membrane
molecular_function	GO:0050518	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity