Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGTTAAGTGACAGTTTGGTCCCTGAGTTTTAAAACTCAACAAATATACCCCTGAGTTTTTAGATAAGCAGCCAAATGGTCCCTGCCGTTCAATTTCCGTGAAGTCACTAACGGAGAGGTGATGTGGCGCCCATTAAAATGACATGGCGTCCTGATGTGGTTACTGACGTGGCAATTTTCAAGTTTTCACTGGATGAGATGGCAATTTTAAAGTCCACGTGTGTTCCCAAAAATCAAACCTAAAAAAAAAAAAGAAAATCGAACAGATCTCCTTCGTGTTTCCCCTTTTCGTTCGTCTTCTTCATCCATCGATTAGGGTTCTTAAAATTACTCCAAATTTGAAGCTGGATGTCACGAGATATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAATTAAGAACCCTAGCTACTGTCACTGTGGGTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGTATGTATTCTTTTGTTTATGACTAGTTTATTCATTTTTCGGATGTTTGCAATTTGTTTGCAATTTGTTTTACATACTCGACTGCTCGTCTTCTCTGTTGTGTAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGTGTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTATCGTGTAATAATTATAGTATTGGTGGGCAATTTAGTGATTGTATTTGGGTTTTGATTGGGAAGAACTGTAAAAATTATGGATACATGAAGGTTGTGATGATTTTTTTTTTTTTTTTTTGTGTTCTTGGAAAGATTATCTATGTTGTAGCTATGTTCTTAATGTTATGGAATTGTGATGGAGTTTGCTTCAGCG
mRNA sequence
ATGTCACGAGATATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAATTAAGAACCCTAGCTACTGTCACTGTGGGTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGTGTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTATCGTGTAATAATTATAGTATTGGTGGGCAATTTAGTGATTGTATTTGGGTTTTGA
Coding sequence (CDS)
ATGTCACGAGATATGCCACAGAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAATTAAGAACCCTAGCTACTGTCACTGTGGGTTACGAGCTCGATTAATCACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGGGTTTTTTGATTGGTGTGATCCAGAAGTATCAGAACACAGCAAAGAAGTGATTATCAAACTAAGAGATGAAGTTGGTCAGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTATCGTGTAATAATTATAGTATTGGTGGGCAATTTAGTGATTGTATTTGGGTTTTGA
Protein sequence
MSRDMPQKLSKIAMDNFEESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEVGQLKKIAQNLRRLEWLYRVIIIVLVGNLVIVFGF
Homology
BLAST of Spg025033 vs. NCBI nr
Match:
KAG6514840.1 (hypothetical protein ZIOFF_025214 [Zingiber officinale])
HSP 1 Score: 85.1 bits (209), Expect = 4.7e-13
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 0
Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI------- 93
CHCGLRA L TSWT+ NPGRRF+ CP Y+ GCGFF W DPE+SE SK +I
Sbjct: 28 CHCGLRATLQTSWTESNPGRRFFSCPKYR--QKGCGFFLWHDPELSERSKTIINELKMIN 87
Query: 94 IKLRDEVGQLKK 99
KL+ E+ +LKK
Sbjct: 88 KKLKLEINELKK 97
BLAST of Spg025033 vs. NCBI nr
Match:
CAD1823597.1 (unnamed protein product [Ananas comosus var. bracteatus])
HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEV 93
C CGL+A TS T NPGRRFYGC YK N GCGFF W DPE+ E KE II+L +++
Sbjct: 23 CFCGLKAPQRTSLTFDNPGRRFYGCINYKRN--GCGFFRWRDPEICERGKEYIIELLEQI 82
Query: 94 GQLKK 99
G+LKK
Sbjct: 83 GRLKK 85
BLAST of Spg025033 vs. NCBI nr
Match:
KAG6514370.1 (hypothetical protein ZIOFF_024723 [Zingiber officinale])
HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0
Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCGFFDWCDPEVSEHSKEVI--- 93
CHCGLRA L TSWT+ NPGR F+ CP Y+ + +GCGFF W DPE+SE SK +I
Sbjct: 28 CHCGLRATLQTSWTESNPGRHFFSCPKYRVSFCYINTGCGFFLWHDPELSERSKTIINEL 87
Query: 94 ----IKLRDEVGQLKK 99
KL+ E+ +LKK
Sbjct: 88 KIINKKLKLEINELKK 103
BLAST of Spg025033 vs. NCBI nr
Match:
KAG6473655.1 (hypothetical protein ZIOFF_067572 [Zingiber officinale])
HSP 1 Score: 81.3 bits (199), Expect = 6.8e-12
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 0
Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI------- 93
C+CGLRA L SWT+ NPGRRF+ CP YK GCGFF W DPE SE SK +I
Sbjct: 28 CNCGLRAILQISWTESNPGRRFFSCPKYKQR--GCGFFSWYDPEPSERSKTIINDLKKNN 87
Query: 94 IKLRDEVGQLKK 99
KL+ E+ +LKK
Sbjct: 88 NKLKLEISELKK 97
BLAST of Spg025033 vs. NCBI nr
Match:
KAG6527582.1 (hypothetical protein ZIOFF_009697 [Zingiber officinale])
HSP 1 Score: 80.9 bits (198), Expect = 8.9e-12
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 0
Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVI------- 93
C+CGLRA L TSWT+ NP RRF+ CP Y+ GCGFF W DPEVSE SK +I
Sbjct: 28 CYCGLRATLQTSWTESNPRRRFFSCPKYR--QKGCGFFLWHDPEVSERSKTIINELKMNN 87
Query: 94 IKLRDEVGQLKK 99
KL+ E+ +LKK
Sbjct: 88 KKLKLEINELKK 97
BLAST of Spg025033 vs. ExPASy TrEMBL
Match:
A0A6V7NYI1 (GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS6808 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 6.6e-13
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVIIKLRDEV 93
C CGL+A TS T NPGRRFYGC YK N GCGFF W DPE+ E KE II+L +++
Sbjct: 23 CFCGLKAPQRTSLTFDNPGRRFYGCINYKRN--GCGFFRWRDPEICERGKEYIIELLEQI 82
Query: 94 GQLKK 99
G+LKK
Sbjct: 83 GRLKK 85
BLAST of Spg025033 vs. ExPASy TrEMBL
Match:
A0A6V7P503 (GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS9126 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 5.6e-12
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0
Query: 28 IKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVSEHSKEVII 87
+ NP C CGL+A TS T N GRRFYGC YK N GCGFF W DPE+ E KE II
Sbjct: 20 VDNP-ICFCGLKAPQRTSLTFDNLGRRFYGCINYKRN--GCGFFRWRDPEICERGKEYII 79
Query: 88 KLRDEVGQLKK 99
+L +++G+LKK
Sbjct: 80 ELLEQIGRLKK 87
BLAST of Spg025033 vs. ExPASy TrEMBL
Match:
A0A445HAE1 (GRF-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_035499 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 0
Query: 18 EESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDP 77
E S S+ ++ +C C + A L+TSWT+ NPGRRFYGC YK G+ GC FF W DP
Sbjct: 2 ERSSSSYTSKARSRVFCLCNIEAPLVTSWTEENPGRRFYGCGLYKDRGTKGCNFFQWHDP 61
Query: 78 EVSEHSKEVIIKLRDEVGQLKKIAQNLRRL--------EWLYRVIIIVLVGNLV 123
+ K++I+ L EV +LK ++L+ + + L+ V+++ + NL+
Sbjct: 62 VDNNRQKKIIVGLMKEVDELKLREKDLQTMISEMKMKEKCLWIVLVVCWLKNLM 115
BLAST of Spg025033 vs. ExPASy TrEMBL
Match:
A0A445ILI1 (GRF-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_026829 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 9.6e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 0
Query: 18 EESIRGDNSEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGS-GCGFFDWCDP 77
E S E ++ +C C + A L+TSWT+ NPGRRFYGC YK G+ GC FF W DP
Sbjct: 88 ERSSSSYTFEARSRVFCLCNIEAPLVTSWTEENPGRRFYGCGLYKDIGTKGCNFFQWHDP 147
Query: 78 EVSEHSKEVIIKLRDEVGQLKKIAQNLRRL 107
+ K++I+ L EV +LK ++L+ +
Sbjct: 148 VGNNRQKKIIVGLMKEVDELKLREKDLQTM 177
BLAST of Spg025033 vs. ExPASy TrEMBL
Match:
A0A0B2QQH9 (GRF-type domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=glysoja_046783 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0
Query: 26 SEIKNPSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNG-SGCGFFDWCDPEVSEHSKE 85
SE ++ +C C + A L+TSWT+ NPGRRFYGC YK G C FF W DP + K+
Sbjct: 7 SEARSRVFCPCNIEAPLVTSWTEENPGRRFYGCGLYKDTGRKWCNFFQWLDPIGNNRQKK 66
Query: 86 VIIKLRDEVGQLK 98
+I+ L EV +LK
Sbjct: 67 IIVGLMKEVDELK 79
BLAST of Spg025033 vs. TAIR 10
Match:
AT3G42860.1 (zinc knuckle (CCHC-type) family protein )
HSP 1 Score: 55.8 bits (133), Expect = 2.9e-08
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 34 CHCGLRARLI-TSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD 76
C CG+ LI TS T +NPGR+FY CP + NG GCGFF WCD
Sbjct: 96 CPCGVGICLILTSNTPKNPGRKFYKCPNREENG-GCGFFQWCD 137
BLAST of Spg025033 vs. TAIR 10
Match:
AT1G54930.1 (GRF zinc finger / Zinc knuckle protein )
HSP 1 Score: 45.4 bits (106), Expect = 3.9e-05
Identity = 21/49 (42.86%), Postives = 26/49 (53.06%), Query Frame = 0
Query: 30 NPSYCHCGLRA---RLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCD 76
+P HC A +TS T++NP RRFY CP CG+F WCD
Sbjct: 34 SPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP-------SCGYFKWCD 75
BLAST of Spg025033 vs. TAIR 10
Match:
AT5G33393.1 (unknown protein; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 24/66 (36.36%), Postives = 32/66 (48.48%), Query Frame = 0
Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCGFFDWCDPEVS-EHSKEVIIKLRDE 93
C+CG I SWT N GRRF+ C + GF W D E K +++ RDE
Sbjct: 32 CNCGRSTTKIKSWTDDNSGRRFFRCDVH-------GFVSWSDVEKQCTWQKLSLLEARDE 90
Query: 94 VGQLKK 99
+ LK+
Sbjct: 92 LKALKE 90
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6514840.1 | 4.7e-13 | 56.94 | hypothetical protein ZIOFF_025214 [Zingiber officinale] | [more] |
| CAD1823597.1 | 1.4e-12 | 60.00 | unnamed protein product [Ananas comosus var. bracteatus] | [more] |
| KAG6514370.1 | 3.1e-12 | 52.63 | hypothetical protein ZIOFF_024723 [Zingiber officinale] | [more] |
| KAG6473655.1 | 6.8e-12 | 55.56 | hypothetical protein ZIOFF_067572 [Zingiber officinale] | [more] |
| KAG6527582.1 | 8.9e-12 | 55.56 | hypothetical protein ZIOFF_009697 [Zingiber officinale] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6V7NYI1 | 6.6e-13 | 60.00 | GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 G... | [more] |
| A0A6V7P503 | 5.6e-12 | 56.34 | GRF-type domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 G... | [more] |
| A0A445HAE1 | 7.3e-12 | 36.84 | GRF-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_035499 PE=4 ... | [more] |
| A0A445ILI1 | 9.6e-12 | 42.22 | GRF-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_026829 PE=4 ... | [more] |
| A0A0B2QQH9 | 1.3e-11 | 47.95 | GRF-type domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=glysoja... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G42860.1 | 2.9e-08 | 60.47 | zinc knuckle (CCHC-type) family protein | [more] |
| AT1G54930.1 | 3.9e-05 | 42.86 | GRF zinc finger / Zinc knuckle protein | [more] |
| AT5G33393.1 | 1.5e-04 | 36.36 | unknown protein; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins... | [more] |
