Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCGTCTCAAAAAGAAGGTGGATCATTAATGCAAATAATCAGGTCACTGCTCTCGCTATTCTGCTTCTGGTTTGCCTCTGCATTCACCGATCTCACAATTCCATAGTCACAATTGTTCTAGTTCTTAAGCTGATTGAGTATATATCTTGAGGACATCATTCTTGTCTCTATTTGCTTGGCTGTGTCCATTTTCTAGATTAGCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA
mRNA sequence
ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA
Coding sequence (CDS)
ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA
Protein sequence
MADGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDDPHCAEAPVQPSAFLQIESQTALILHESILLESKKFLAHSNPRVE
Homology
BLAST of Spg003549 vs. NCBI nr
Match:
XP_022137706.1 (uncharacterized protein LOC111009076 [Momordica charantia])
HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
DG+VYTIDAAK MKYEELFPVETKKFGYDPNN NTKFKSVEEALDD
Sbjct: 64 DGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDD 109
BLAST of Spg003549 vs. NCBI nr
Match:
XP_038893643.1 (uncharacterized protein LOC120082512 [Benincasa hispida])
HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVEEALDD
Sbjct: 62 DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEEALDD 107
BLAST of Spg003549 vs. NCBI nr
Match:
XP_004137395.2 (uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical protein Csa_013194 [Cucumis sativus])
HSP 1 Score: 87.4 bits (215), Expect = 6.9e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVE+ALDD
Sbjct: 62 DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDD 107
BLAST of Spg003549 vs. NCBI nr
Match:
XP_023524446.1 (uncharacterized protein LOC111788363 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0
Query: 4 GDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
G+VYTIDAAK MKYEELFPVETKKFGYDPNN NTK KSVEE+LDD
Sbjct: 62 GEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKLKSVEESLDD 106
BLAST of Spg003549 vs. NCBI nr
Match:
KAG6584439.1 (Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
+G VYTIDAAK MKYEELFPVET+KFGYDPNN +TKFKSVEEALDD
Sbjct: 89 EGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDD 134
BLAST of Spg003549 vs. ExPASy TrEMBL
Match:
A0A6J1C7F9 (uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009076 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
DG+VYTIDAAK MKYEELFPVETKKFGYDPNN NTKFKSVEEALDD
Sbjct: 64 DGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDD 109
BLAST of Spg003549 vs. ExPASy TrEMBL
Match:
A0A0A0LVD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 3.3e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVE+ALDD
Sbjct: 62 DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDD 107
BLAST of Spg003549 vs. ExPASy TrEMBL
Match:
A0A6J1KIE4 (uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 9.7e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
+G VYTIDAAK MKYEELFPVET+KFGYDPNN +TKFKSVEEALDD
Sbjct: 62 EGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDD 107
BLAST of Spg003549 vs. ExPASy TrEMBL
Match:
A0A6J1EB87 (uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC111431590 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
+G VYTIDAAK MKYEELFPVET++FGYDPNN +TKFKSVEEALDD
Sbjct: 64 EGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDD 109
BLAST of Spg003549 vs. ExPASy TrEMBL
Match:
A0A5A7SXI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00570 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTK KSVE+ALDD
Sbjct: 62 DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDD 107
BLAST of Spg003549 vs. TAIR 10
Match:
AT2G25720.1 (unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 58.2 bits (139), Expect = 4.2e-09
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 3 DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
D D+Y+IDAAK KY++LFPVE KKFGY P F+S E+ALDD
Sbjct: 64 DEDIYSIDAAKKKKYDDLFPVEAKKFGYIP---KANFESREDALDD 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022137706.1 | 2.1e-15 | 93.48 | uncharacterized protein LOC111009076 [Momordica charantia] | [more] |
| XP_038893643.1 | 3.1e-14 | 89.13 | uncharacterized protein LOC120082512 [Benincasa hispida] | [more] |
| XP_004137395.2 | 6.9e-14 | 86.96 | uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical ... | [more] |
| XP_023524446.1 | 1.2e-13 | 88.89 | uncharacterized protein LOC111788363 [Cucurbita pepo subsp. pepo] | [more] |
| KAG6584439.1 | 2.0e-13 | 86.96 | Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C7F9 | 1.0e-15 | 93.48 | uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
| A0A0A0LVD6 | 3.3e-14 | 86.96 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1 | [more] |
| A0A6J1KIE4 | 9.7e-14 | 86.96 | uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520... | [more] |
| A0A6J1EB87 | 2.2e-13 | 84.78 | uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC1114315... | [more] |
| A0A5A7SXI8 | 2.8e-13 | 84.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G25720.1 | 4.2e-09 | 60.87 | unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bac... | [more] |
