Spg003549 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003549
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 45750289 .. 45750765 (+)
RNA-Seq Expression	Spg003549
Synteny	Spg003549

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCGTCTCAAAAAGAAGGTGGATCATTAATGCAAATAATCAGGTCACTGCTCTCGCTATTCTGCTTCTGGTTTGCCTCTGCATTCACCGATCTCACAATTCCATAGTCACAATTGTTCTAGTTCTTAAGCTGATTGAGTATATATCTTGAGGACATCATTCTTGTCTCTATTTGCTTGGCTGTGTCCATTTTCTAGATTAGCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA

mRNA sequence

ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA

Coding sequence (CDS)

ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA

Protein sequence

MADGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDDPHCAEAPVQPSAFLQIESQTALILHESILLESKKFLAHSNPRVE

Homology

[Close]

BLAST of Spg003549 vs. NCBI nr
Match: XP_022137706.1 (uncharacterized protein LOC111009076 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG+VYTIDAAK MKYEELFPVETKKFGYDPNN NTKFKSVEEALDD
Sbjct: 64  DGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDD 109

[Close]

BLAST of Spg003549 vs. NCBI nr
Match: XP_038893643.1 (uncharacterized protein LOC120082512 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVEEALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEEALDD 107

[Close]

BLAST of Spg003549 vs. NCBI nr
Match: XP_004137395.2 (uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical protein Csa_013194 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 6.9e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVE+ALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDD 107

[Close]

BLAST of Spg003549 vs. NCBI nr
Match: XP_023524446.1 (uncharacterized protein LOC111788363 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 4   GDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           G+VYTIDAAK MKYEELFPVETKKFGYDPNN NTK KSVEE+LDD
Sbjct: 62  GEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKLKSVEESLDD 106

[Close]

BLAST of Spg003549 vs. NCBI nr
Match: KAG6584439.1 (Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           +G VYTIDAAK MKYEELFPVET+KFGYDPNN +TKFKSVEEALDD
Sbjct: 89  EGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDD 134

[Close]

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A6J1C7F9 (uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009076 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG+VYTIDAAK MKYEELFPVETKKFGYDPNN NTKFKSVEEALDD
Sbjct: 64  DGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDD 109

[Close]

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A0A0LVD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.3e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVE+ALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDD 107

[Close]

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A6J1KIE4 (uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.7e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           +G VYTIDAAK MKYEELFPVET+KFGYDPNN +TKFKSVEEALDD
Sbjct: 62  EGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDD 107

[Close]

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A6J1EB87 (uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC111431590 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           +G VYTIDAAK MKYEELFPVET++FGYDPNN +TKFKSVEEALDD
Sbjct: 64  EGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDD 109

[Close]

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A5A7SXI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00570 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTK KSVE+ALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDD 107

[Close]

BLAST of Spg003549 vs. TAIR 10
Match: AT2G25720.1 (unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-09
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           D D+Y+IDAAK  KY++LFPVE KKFGY P      F+S E+ALDD
Sbjct: 64  DEDIYSIDAAKKKKYDDLFPVEAKKFGYIP---KANFESREDALDD 106

The following BLAST results are available for this feature:

BLAST of Spg003549 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137706.1	2.1e-15	93.48	uncharacterized protein LOC111009076 [Momordica charantia]	[more]
XP_038893643.1	3.1e-14	89.13	uncharacterized protein LOC120082512 [Benincasa hispida]	[more]
XP_004137395.2	6.9e-14	86.96	uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical ...	[more]
XP_023524446.1	1.2e-13	88.89	uncharacterized protein LOC111788363 [Cucurbita pepo subsp. pepo]	[more]
KAG6584439.1	2.0e-13	86.96	Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg003549 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg003549 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7F9	1.0e-15	93.48	uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0LVD6	3.3e-14	86.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1	[more]
A0A6J1KIE4	9.7e-14	86.96	uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520...	[more]
A0A6J1EB87	2.2e-13	84.78	uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC1114315...	[more]
A0A5A7SXI8	2.8e-13	84.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg003549 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25720.1	4.2e-09	60.87	unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013865	Protein FAM32A	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 3..48
None	No IPR available	PANTHER	PTHR13282:SF7	OS04G0566000 PROTEIN	coord: 3..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003549.1	Spg003549.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus