Spg003549 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003549
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 45750289 .. 45750765 (+)
RNA-Seq ExpressionSpg003549
SyntenySpg003549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCGTCTCAAAAAGAAGGTGGATCATTAATGCAAATAATCAGGTCACTGCTCTCGCTATTCTGCTTCTGGTTTGCCTCTGCATTCACCGATCTCACAATTCCATAGTCACAATTGTTCTAGTTCTTAAGCTGATTGAGTATATATCTTGAGGACATCATTCTTGTCTCTATTTGCTTGGCTGTGTCCATTTTCTAGATTAGCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA

mRNA sequence

ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA

Coding sequence (CDS)

ATGGCAGATGGAGATGTGTATACTATTGATGCAGCCAAGCATATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAAGAAGTTTGGTTACGACCCCAACAACTTCAACACCAAGTTCAAGTCTGTGGAAGAAGCGCTAGATGATCCCCATTGTGCTGAAGCACCAGTTCAACCTTCAGCTTTCTTACAAATTGAATCTCAAACAGCATTAATCCTTCACGAGAGTATCTTGTTGGAAAGCAAGAAATTTCTGGCACATAGTAATCCGAGAGTTGAATGA

Protein sequence

MADGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDDPHCAEAPVQPSAFLQIESQTALILHESILLESKKFLAHSNPRVE
Homology
BLAST of Spg003549 vs. NCBI nr
Match: XP_022137706.1 (uncharacterized protein LOC111009076 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG+VYTIDAAK MKYEELFPVETKKFGYDPNN NTKFKSVEEALDD
Sbjct: 64  DGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDD 109

BLAST of Spg003549 vs. NCBI nr
Match: XP_038893643.1 (uncharacterized protein LOC120082512 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVEEALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEEALDD 107

BLAST of Spg003549 vs. NCBI nr
Match: XP_004137395.2 (uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical protein Csa_013194 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 6.9e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVE+ALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDD 107

BLAST of Spg003549 vs. NCBI nr
Match: XP_023524446.1 (uncharacterized protein LOC111788363 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 4   GDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           G+VYTIDAAK MKYEELFPVETKKFGYDPNN NTK KSVEE+LDD
Sbjct: 62  GEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKLKSVEESLDD 106

BLAST of Spg003549 vs. NCBI nr
Match: KAG6584439.1 (Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           +G VYTIDAAK MKYEELFPVET+KFGYDPNN +TKFKSVEEALDD
Sbjct: 89  EGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDD 134

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A6J1C7F9 (uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009076 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG+VYTIDAAK MKYEELFPVETKKFGYDPNN NTKFKSVEEALDD
Sbjct: 64  DGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDD 109

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A0A0LVD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.3e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTKFKSVE+ALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDD 107

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A6J1KIE4 (uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.7e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           +G VYTIDAAK MKYEELFPVET+KFGYDPNN +TKFKSVEEALDD
Sbjct: 62  EGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDD 107

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A6J1EB87 (uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC111431590 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           +G VYTIDAAK MKYEELFPVET++FGYDPNN +TKFKSVEEALDD
Sbjct: 64  EGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDD 109

BLAST of Spg003549 vs. ExPASy TrEMBL
Match: A0A5A7SXI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00570 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           DG +YTIDAAK MKYEELFPVET+KFGYDPNN NTK KSVE+ALDD
Sbjct: 62  DGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDD 107

BLAST of Spg003549 vs. TAIR 10
Match: AT2G25720.1 (unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-09
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 3   DGDVYTIDAAKHMKYEELFPVETKKFGYDPNNFNTKFKSVEEALDD 49
           D D+Y+IDAAK  KY++LFPVE KKFGY P      F+S E+ALDD
Sbjct: 64  DEDIYSIDAAKKKKYDDLFPVEAKKFGYIP---KANFESREDALDD 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137706.12.1e-1593.48uncharacterized protein LOC111009076 [Momordica charantia][more]
XP_038893643.13.1e-1489.13uncharacterized protein LOC120082512 [Benincasa hispida][more]
XP_004137395.26.9e-1486.96uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical ... [more]
XP_023524446.11.2e-1388.89uncharacterized protein LOC111788363 [Cucurbita pepo subsp. pepo][more]
KAG6584439.12.0e-1386.96Basic transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C7F91.0e-1593.48uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0LVD63.3e-1486.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1[more]
A0A6J1KIE49.7e-1486.96uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520... [more]
A0A6J1EB872.2e-1384.78uncharacterized protein LOC111431590 OS=Cucurbita moschata OX=3662 GN=LOC1114315... [more]
A0A5A7SXI82.8e-1384.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT2G25720.14.2e-0960.87unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013865Protein FAM32APANTHERPTHR13282UNCHARACTERIZEDcoord: 3..48
NoneNo IPR availablePANTHERPTHR13282:SF7OS04G0566000 PROTEINcoord: 3..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003549.1Spg003549.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus