Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAGAAACCGATTTGCAGGCGGAGATTTCTCTGTGTCGAGTTTACAAAAGAGCCGGAGTCGAAGATCACCCTTCGCTTCCCCGTTCTCTTCCGTCGAGAGCGTCGTCTTCGAGAATGACGAGCTCGTCGTCGTCTCAGAAGAGCCTCTCCGGTGCCATGAATGCCCAAACTTCATCATCTTCCACAGACAAATTCCAGACGAGCTTCGAATCCCCATTTCACCACCACCACCACTTCAAATCACCGCGCTTGCAGCCACTGCTGCCGACGCCTCCGCCACAAGCTCTTGCGAAGAAGTCACCACCGTCCTCGGCCTCTCCAAGCACAACCCTTTTCCAACAACTCCATTAATCAACATCACCTCCACTTCTCTTGGACTCCCAGCTTCTGCAACTCCCAATTCCATGGAAGAAGACGACCACCAATCCATCATTCTCCATAAACAACCTTCTTCTTCATCTTCACTGGTTTTGCCTACTTACGCCTCTTTCTTCTCCCCCTCTTCCAATTCTCTCGACGACCTCCAAAAACTCATCCACTTTCAACAACAACCACCGCCGCCGCAGCGCCCTTGCCATCGGCTTCCACCGCCATCGTAA
mRNA sequence
ATGCGAAGAAACCGATTTGCAGGCGGAGATTTCTCTGTGTCGAGTTTACAAAAGAGCCGGAGTCGAAGATCACCCTTCGCTTCCCCGTTCTCTTCCGTCGAGAGCGTCGTCTTCGAGAATGACGAGCTCGTCGTCGTCTCAGAAGAGCCTCTCCGGTGCCATGAATGCCCAAACTTCATCATCTTCCACAGACAAATTCCAGACGAGCTTCGAATCCCCATTTCACCACCACCACCACTTCAAATCACCGCGCTTGCAGCCACTGCTGCCGACGCCTCCGCCACAAGCTCTTGCGAAGAAGTCACCACCGTCCTCGGCCTCTCCAAGCACAACCCTTTTCCAACAACTCCATTAATCAACATCACCTCCACTTCTCTTGGACTCCCAGCTTCTGCAACTCCCAATTCCATGGAAGAAGACGACCACCAATCCATCATTCTCCATAAACAACCTTCTTCTTCATCTTCACTGGTTTTGCCTACTTACGCCTCTTTCTTCTCCCCCTCTTCCAATTCTCTCGACGACCTCCAAAAACTCATCCACTTTCAACAACAACCACCGCCGCCGCAGCGCCCTTGCCATCGGCTTCCACCGCCATCGTAA
Coding sequence (CDS)
ATGCGAAGAAACCGATTTGCAGGCGGAGATTTCTCTGTGTCGAGTTTACAAAAGAGCCGGAGTCGAAGATCACCCTTCGCTTCCCCGTTCTCTTCCGTCGAGAGCGTCGTCTTCGAGAATGACGAGCTCGTCGTCGTCTCAGAAGAGCCTCTCCGGTGCCATGAATGCCCAAACTTCATCATCTTCCACAGACAAATTCCAGACGAGCTTCGAATCCCCATTTCACCACCACCACCACTTCAAATCACCGCGCTTGCAGCCACTGCTGCCGACGCCTCCGCCACAAGCTCTTGCGAAGAAGTCACCACCGTCCTCGGCCTCTCCAAGCACAACCCTTTTCCAACAACTCCATTAATCAACATCACCTCCACTTCTCTTGGACTCCCAGCTTCTGCAACTCCCAATTCCATGGAAGAAGACGACCACCAATCCATCATTCTCCATAAACAACCTTCTTCTTCATCTTCACTGGTTTTGCCTACTTACGCCTCTTTCTTCTCCCCCTCTTCCAATTCTCTCGACGACCTCCAAAAACTCATCCACTTTCAACAACAACCACCGCCGCCGCAGCGCCCTTGCCATCGGCTTCCACCGCCATCGTAA
Protein sequence
MRRNRFAGGDFSVSSLQKSRSRRSPFASPFSSVESVVFENDELVVVSEEPLRCHECPNFIIFHRQIPDELRIPISPPPPLQITALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASATPNSMEEDDHQSIILHKQPSSSSSLVLPTYASFFSPSSNSLDDLQKLIHFQQQPPPPQRPCHRLPPPS
Homology
BLAST of Sgr029877 vs. NCBI nr
Match:
XP_022136478.1 (NAC domain-containing protein 35 [Momordica charantia])
HSP 1 Score: 163.3 bits (412), Expect = 2.1e-36
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0
Query: 79 PLQITALAAT-AADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASA-TPNS 138
PLQ+++ T AADASATSSCEEVTTVLGLSKHNPFPTTPLIN+ +TSLGLP+S+ TPNS
Sbjct: 249 PLQMSSTVETAAADASATSSCEEVTTVLGLSKHNPFPTTPLINMATTSLGLPSSSTTPNS 308
Query: 139 MEEDDHQSIILHKQPSSSSSLVLPTYASFFSPS--SNSLDDLQKLIHFQQQPPPPQRPCH 198
MEEDDHQSIILHKQ SSSLVLP+YASFFSPS SNSLDDLQKLIHFQQ PPP
Sbjct: 309 MEEDDHQSIILHKQ-QPSSSLVLPSYASFFSPSPASNSLDDLQKLIHFQQPPPPSASVAI 368
Query: 199 RLPPP 200
PPP
Sbjct: 369 VNPPP 372
BLAST of Sgr029877 vs. NCBI nr
Match:
XP_038903245.1 (NAC domain-containing protein 35 [Benincasa hispida])
HSP 1 Score: 151.0 bits (380), Expect = 1.1e-32
Identity = 90/116 (77.59%), Postives = 97/116 (83.62%), Query Frame = 0
Query: 80 LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
LQI + ATAADASATSSCEEVTTVLGLSK NPFPTT LIN+ +T SL +PASA TPN
Sbjct: 260 LQIGVGVEATAADASATSSCEEVTTVLGLSKQNPFPTTSLINMAATSSLAIPASASTTPN 319
Query: 140 SMEEDDHQSIILHKQPS--SSSSLVLPTYASFFSPSSNSLDDLQKLIHFQQQPPPP 190
MEEDDHQSIILHKQ SSSSL+LPTY SFFSPS+NSLDDLQKLIH+QQQ P P
Sbjct: 320 CMEEDDHQSIILHKQQQLPSSSSLILPTYTSFFSPSNNSLDDLQKLIHYQQQHPLP 375
BLAST of Sgr029877 vs. NCBI nr
Match:
XP_011650588.1 (NAC domain-containing protein 35 [Cucumis sativus] >KGN56295.1 hypothetical protein Csa_010209 [Cucumis sativus])
HSP 1 Score: 149.1 bits (375), Expect = 4.2e-32
Identity = 92/125 (73.60%), Postives = 100/125 (80.00%), Query Frame = 0
Query: 77 PPPLQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA-- 136
P LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PLIN+ +T SL +PASA
Sbjct: 253 PHQLQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLINMAATSSLQIPASAST 312
Query: 137 TPNSMEEDDHQSIILHKQPS--------SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQ 189
TPN MEEDDHQSIILHKQ SSSSL+LPTY SFFSPSS NSLDDLQKLIH+Q
Sbjct: 313 TPNCMEEDDHQSIILHKQQQQQQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQ 372
BLAST of Sgr029877 vs. NCBI nr
Match:
XP_008452197.1 (PREDICTED: NAC domain-containing protein 55 [Cucumis melo])
HSP 1 Score: 145.6 bits (366), Expect = 4.6e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0
Query: 80 LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320
Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
MEEDDHQSIILH + SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378
BLAST of Sgr029877 vs. NCBI nr
Match:
KAA0060495.1 (NAC domain-containing protein 55 [Cucumis melo var. makuwa] >TYK18577.1 NAC domain-containing protein 55 [Cucumis melo var. makuwa])
HSP 1 Score: 145.6 bits (366), Expect = 4.6e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0
Query: 80 LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320
Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
MEEDDHQSIILH + SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378
BLAST of Sgr029877 vs. ExPASy TrEMBL
Match:
A0A6J1C7N2 (NAC domain-containing protein 35 OS=Momordica charantia OX=3673 GN=LOC111008182 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0
Query: 79 PLQITALAAT-AADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASA-TPNS 138
PLQ+++ T AADASATSSCEEVTTVLGLSKHNPFPTTPLIN+ +TSLGLP+S+ TPNS
Sbjct: 249 PLQMSSTVETAAADASATSSCEEVTTVLGLSKHNPFPTTPLINMATTSLGLPSSSTTPNS 308
Query: 139 MEEDDHQSIILHKQPSSSSSLVLPTYASFFSPS--SNSLDDLQKLIHFQQQPPPPQRPCH 198
MEEDDHQSIILHKQ SSSLVLP+YASFFSPS SNSLDDLQKLIHFQQ PPP
Sbjct: 309 MEEDDHQSIILHKQ-QPSSSLVLPSYASFFSPSPASNSLDDLQKLIHFQQPPPPSASVAI 368
Query: 199 RLPPP 200
PPP
Sbjct: 369 VNPPP 372
BLAST of Sgr029877 vs. ExPASy TrEMBL
Match:
A0A0A0L2S0 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G113370 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 92/125 (73.60%), Postives = 100/125 (80.00%), Query Frame = 0
Query: 77 PPPLQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA-- 136
P LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PLIN+ +T SL +PASA
Sbjct: 253 PHQLQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLINMAATSSLQIPASAST 312
Query: 137 TPNSMEEDDHQSIILHKQPS--------SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQ 189
TPN MEEDDHQSIILHKQ SSSSL+LPTY SFFSPSS NSLDDLQKLIH+Q
Sbjct: 313 TPNCMEEDDHQSIILHKQQQQQQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQ 372
BLAST of Sgr029877 vs. ExPASy TrEMBL
Match:
A0A5A7V3R0 (NAC domain-containing protein 55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00930 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0
Query: 80 LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320
Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
MEEDDHQSIILH + SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378
BLAST of Sgr029877 vs. ExPASy TrEMBL
Match:
A0A1S3BTB3 (NAC domain-containing protein 55 OS=Cucumis melo OX=3656 GN=LOC103493289 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0
Query: 80 LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320
Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
MEEDDHQSIILH + SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378
BLAST of Sgr029877 vs. ExPASy TrEMBL
Match:
A0A6J1EM76 (NAC domain-containing protein 35 OS=Cucurbita moschata OX=3662 GN=LOC111435880 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 73/132 (55.30%), Postives = 87/132 (65.91%), Query Frame = 0
Query: 80 LQITALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASATPNSMEE 139
++ T + AAD SATSSCEEVTTVLGLSK NPFPTTPLIN+ + S S PNS+E+
Sbjct: 259 VETTTVVVAAADVSATSSCEEVTTVLGLSKQNPFPTTPLINMAAGS-----STPPNSLEQ 318
Query: 140 DDHQSIILHKQPSSSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPP----------- 199
+DHQS I+ KQ SSS Y SFF+PSS NSLDDLQ LI++QQQPP
Sbjct: 319 NDHQSNIIQKQQQPSSS-----YTSFFTPSSNNSLDDLQNLINYQQQPPLSTSAAIVNSL 378
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022136478.1 | 2.1e-36 | 77.60 | NAC domain-containing protein 35 [Momordica charantia] | [more] |
| XP_038903245.1 | 1.1e-32 | 77.59 | NAC domain-containing protein 35 [Benincasa hispida] | [more] |
| XP_011650588.1 | 4.2e-32 | 73.60 | NAC domain-containing protein 35 [Cucumis sativus] >KGN56295.1 hypothetical prot... | [more] |
| XP_008452197.1 | 4.6e-31 | 74.58 | PREDICTED: NAC domain-containing protein 55 [Cucumis melo] | [more] |
| KAA0060495.1 | 4.6e-31 | 74.58 | NAC domain-containing protein 55 [Cucumis melo var. makuwa] >TYK18577.1 NAC doma... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C7N2 | 1.0e-36 | 77.60 | NAC domain-containing protein 35 OS=Momordica charantia OX=3673 GN=LOC111008182 ... | [more] |
| A0A0A0L2S0 | 2.0e-32 | 73.60 | NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G113370 PE=4 SV... | [more] |
| A0A5A7V3R0 | 2.2e-31 | 74.58 | NAC domain-containing protein 55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
| A0A1S3BTB3 | 2.2e-31 | 74.58 | NAC domain-containing protein 55 OS=Cucumis melo OX=3656 GN=LOC103493289 PE=4 SV... | [more] |
| A0A6J1EM76 | 1.6e-21 | 55.30 | NAC domain-containing protein 35 OS=Cucurbita moschata OX=3662 GN=LOC111435880 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
