Sgr029877.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr029877.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	NAC domain-containing protein 35
Location	tig00153552: 1506863 .. 1507465 (+)
Sequence length	603
RNA-Seq Expression	Sgr029877.1
Synteny	Sgr029877.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAGAAACCGATTTGCAGGCGGAGATTTCTCTGTGTCGAGTTTACAAAAGAGCCGGAGTCGAAGATCACCCTTCGCTTCCCCGTTCTCTTCCGTCGAGAGCGTCGTCTTCGAGAATGACGAGCTCGTCGTCGTCTCAGAAGAGCCTCTCCGGTGCCATGAATGCCCAAACTTCATCATCTTCCACAGACAAATTCCAGACGAGCTTCGAATCCCCATTTCACCACCACCACCACTTCAAATCACCGCGCTTGCAGCCACTGCTGCCGACGCCTCCGCCACAAGCTCTTGCGAAGAAGTCACCACCGTCCTCGGCCTCTCCAAGCACAACCCTTTTCCAACAACTCCATTAATCAACATCACCTCCACTTCTCTTGGACTCCCAGCTTCTGCAACTCCCAATTCCATGGAAGAAGACGACCACCAATCCATCATTCTCCATAAACAACCTTCTTCTTCATCTTCACTGGTTTTGCCTACTTACGCCTCTTTCTTCTCCCCCTCTTCCAATTCTCTCGACGACCTCCAAAAACTCATCCACTTTCAACAACAACCACCGCCGCCGCAGCGCCCTTGCCATCGGCTTCCACCGCCATCGTAA

mRNA sequence

ATGCGAAGAAACCGATTTGCAGGCGGAGATTTCTCTGTGTCGAGTTTACAAAAGAGCCGGAGTCGAAGATCACCCTTCGCTTCCCCGTTCTCTTCCGTCGAGAGCGTCGTCTTCGAGAATGACGAGCTCGTCGTCGTCTCAGAAGAGCCTCTCCGGTGCCATGAATGCCCAAACTTCATCATCTTCCACAGACAAATTCCAGACGAGCTTCGAATCCCCATTTCACCACCACCACCACTTCAAATCACCGCGCTTGCAGCCACTGCTGCCGACGCCTCCGCCACAAGCTCTTGCGAAGAAGTCACCACCGTCCTCGGCCTCTCCAAGCACAACCCTTTTCCAACAACTCCATTAATCAACATCACCTCCACTTCTCTTGGACTCCCAGCTTCTGCAACTCCCAATTCCATGGAAGAAGACGACCACCAATCCATCATTCTCCATAAACAACCTTCTTCTTCATCTTCACTGGTTTTGCCTACTTACGCCTCTTTCTTCTCCCCCTCTTCCAATTCTCTCGACGACCTCCAAAAACTCATCCACTTTCAACAACAACCACCGCCGCCGCAGCGCCCTTGCCATCGGCTTCCACCGCCATCGTAA

Coding sequence (CDS)

ATGCGAAGAAACCGATTTGCAGGCGGAGATTTCTCTGTGTCGAGTTTACAAAAGAGCCGGAGTCGAAGATCACCCTTCGCTTCCCCGTTCTCTTCCGTCGAGAGCGTCGTCTTCGAGAATGACGAGCTCGTCGTCGTCTCAGAAGAGCCTCTCCGGTGCCATGAATGCCCAAACTTCATCATCTTCCACAGACAAATTCCAGACGAGCTTCGAATCCCCATTTCACCACCACCACCACTTCAAATCACCGCGCTTGCAGCCACTGCTGCCGACGCCTCCGCCACAAGCTCTTGCGAAGAAGTCACCACCGTCCTCGGCCTCTCCAAGCACAACCCTTTTCCAACAACTCCATTAATCAACATCACCTCCACTTCTCTTGGACTCCCAGCTTCTGCAACTCCCAATTCCATGGAAGAAGACGACCACCAATCCATCATTCTCCATAAACAACCTTCTTCTTCATCTTCACTGGTTTTGCCTACTTACGCCTCTTTCTTCTCCCCCTCTTCCAATTCTCTCGACGACCTCCAAAAACTCATCCACTTTCAACAACAACCACCGCCGCCGCAGCGCCCTTGCCATCGGCTTCCACCGCCATCGTAA

Protein sequence

MRRNRFAGGDFSVSSLQKSRSRRSPFASPFSSVESVVFENDELVVVSEEPLRCHECPNFIIFHRQIPDELRIPISPPPPLQITALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASATPNSMEEDDHQSIILHKQPSSSSSLVLPTYASFFSPSSNSLDDLQKLIHFQQQPPPPQRPCHRLPPPS

Homology

[Close]

BLAST of Sgr029877.1 vs. NCBI nr
Match: XP_022136478.1 (NAC domain-containing protein 35 [Momordica charantia])

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-36
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 79  PLQITALAAT-AADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASA-TPNS 138
           PLQ+++   T AADASATSSCEEVTTVLGLSKHNPFPTTPLIN+ +TSLGLP+S+ TPNS
Sbjct: 249 PLQMSSTVETAAADASATSSCEEVTTVLGLSKHNPFPTTPLINMATTSLGLPSSSTTPNS 308

Query: 139 MEEDDHQSIILHKQPSSSSSLVLPTYASFFSPS--SNSLDDLQKLIHFQQQPPPPQRPCH 198
           MEEDDHQSIILHKQ   SSSLVLP+YASFFSPS  SNSLDDLQKLIHFQQ PPP      
Sbjct: 309 MEEDDHQSIILHKQ-QPSSSLVLPSYASFFSPSPASNSLDDLQKLIHFQQPPPPSASVAI 368

Query: 199 RLPPP 200
             PPP
Sbjct: 369 VNPPP 372

[Close]

BLAST of Sgr029877.1 vs. NCBI nr
Match: XP_038903245.1 (NAC domain-containing protein 35 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-32
Identity = 90/116 (77.59%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 80  LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
           LQI   + ATAADASATSSCEEVTTVLGLSK NPFPTT LIN+ +T SL +PASA  TPN
Sbjct: 260 LQIGVGVEATAADASATSSCEEVTTVLGLSKQNPFPTTSLINMAATSSLAIPASASTTPN 319

Query: 140 SMEEDDHQSIILHKQPS--SSSSLVLPTYASFFSPSSNSLDDLQKLIHFQQQPPPP 190
            MEEDDHQSIILHKQ    SSSSL+LPTY SFFSPS+NSLDDLQKLIH+QQQ P P
Sbjct: 320 CMEEDDHQSIILHKQQQLPSSSSLILPTYTSFFSPSNNSLDDLQKLIHYQQQHPLP 375

[Close]

BLAST of Sgr029877.1 vs. NCBI nr
Match: XP_011650588.1 (NAC domain-containing protein 35 [Cucumis sativus] >KGN56295.1 hypothetical protein Csa_010209 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-32
Identity = 92/125 (73.60%), Postives = 100/125 (80.00%), Query Frame = 0


Query: 77  PPPLQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA-- 136
           P  LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PLIN+ +T SL +PASA  
Sbjct: 253 PHQLQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLINMAATSSLQIPASAST 312

Query: 137 TPNSMEEDDHQSIILHKQPS--------SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQ 189
           TPN MEEDDHQSIILHKQ          SSSSL+LPTY SFFSPSS NSLDDLQKLIH+Q
Sbjct: 313 TPNCMEEDDHQSIILHKQQQQQQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQ 372

[Close]

BLAST of Sgr029877.1 vs. NCBI nr
Match: XP_008452197.1 (PREDICTED: NAC domain-containing protein 55 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.6e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 80  LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
           LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA  TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320

Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
            MEEDDHQSIILH +      SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378

[Close]

BLAST of Sgr029877.1 vs. NCBI nr
Match: KAA0060495.1 (NAC domain-containing protein 55 [Cucumis melo var. makuwa] >TYK18577.1 NAC domain-containing protein 55 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 4.6e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 80  LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
           LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA  TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320

Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
            MEEDDHQSIILH +      SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378

[Close]

BLAST of Sgr029877.1 vs. ExPASy TrEMBL
Match: A0A6J1C7N2 (NAC domain-containing protein 35 OS=Momordica charantia OX=3673 GN=LOC111008182 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 79  PLQITALAAT-AADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASA-TPNS 138
           PLQ+++   T AADASATSSCEEVTTVLGLSKHNPFPTTPLIN+ +TSLGLP+S+ TPNS
Sbjct: 249 PLQMSSTVETAAADASATSSCEEVTTVLGLSKHNPFPTTPLINMATTSLGLPSSSTTPNS 308

Query: 139 MEEDDHQSIILHKQPSSSSSLVLPTYASFFSPS--SNSLDDLQKLIHFQQQPPPPQRPCH 198
           MEEDDHQSIILHKQ   SSSLVLP+YASFFSPS  SNSLDDLQKLIHFQQ PPP      
Sbjct: 309 MEEDDHQSIILHKQ-QPSSSLVLPSYASFFSPSPASNSLDDLQKLIHFQQPPPPSASVAI 368

Query: 199 RLPPP 200
             PPP
Sbjct: 369 VNPPP 372

[Close]

BLAST of Sgr029877.1 vs. ExPASy TrEMBL
Match: A0A0A0L2S0 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G113370 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 92/125 (73.60%), Postives = 100/125 (80.00%), Query Frame = 0


Query: 77  PPPLQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA-- 136
           P  LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PLIN+ +T SL +PASA  
Sbjct: 253 PHQLQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLINMAATSSLQIPASAST 312

Query: 137 TPNSMEEDDHQSIILHKQPS--------SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQ 189
           TPN MEEDDHQSIILHKQ          SSSSL+LPTY SFFSPSS NSLDDLQKLIH+Q
Sbjct: 313 TPNCMEEDDHQSIILHKQQQQQQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQ 372

[Close]

BLAST of Sgr029877.1 vs. ExPASy TrEMBL
Match: A0A5A7V3R0 (NAC domain-containing protein 55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00930 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 80  LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
           LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA  TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320

Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
            MEEDDHQSIILH +      SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378

[Close]

BLAST of Sgr029877.1 vs. ExPASy TrEMBL
Match: A0A1S3BTB3 (NAC domain-containing protein 55 OS=Cucumis melo OX=3656 GN=LOC103493289 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 88/118 (74.58%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 80  LQI-TALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITST-SLGLPASA--TPN 139
           LQI + + ATAADASATSSCEEVTTVLGLSK NPFPT+PL+N+ +T SL +PASA  TPN
Sbjct: 261 LQIGSGVEATAADASATSSCEEVTTVLGLSKQNPFPTSPLLNMAATSSLQIPASASTTPN 320

Query: 140 SMEEDDHQSIILHKQPS----SSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPPP 189
            MEEDDHQSIILH +      SSSSL+LPTY SFFSPSS NSLDDLQKLIH+QQQ PP
Sbjct: 321 CMEEDDHQSIILHNKQQQLLPSSSSLILPTYTSFFSPSSNNSLDDLQKLIHYQQQQPP 378

[Close]

BLAST of Sgr029877.1 vs. ExPASy TrEMBL
Match: A0A6J1EM76 (NAC domain-containing protein 35 OS=Cucurbita moschata OX=3662 GN=LOC111435880 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 73/132 (55.30%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 80  LQITALAATAADASATSSCEEVTTVLGLSKHNPFPTTPLINITSTSLGLPASATPNSMEE 139
           ++ T +   AAD SATSSCEEVTTVLGLSK NPFPTTPLIN+ + S     S  PNS+E+
Sbjct: 259 VETTTVVVAAADVSATSSCEEVTTVLGLSKQNPFPTTPLINMAAGS-----STPPNSLEQ 318

Query: 140 DDHQSIILHKQPSSSSSLVLPTYASFFSPSS-NSLDDLQKLIHFQQQPP----------- 199
           +DHQS I+ KQ   SSS     Y SFF+PSS NSLDDLQ LI++QQQPP           
Sbjct: 319 NDHQSNIIQKQQQPSSS-----YTSFFTPSSNNSLDDLQNLINYQQQPPLSTSAAIVNSL 378

The following BLAST results are available for this feature:

BLAST of Sgr029877.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136478.1	2.1e-36	77.60	NAC domain-containing protein 35 [Momordica charantia]	[more]
XP_038903245.1	1.1e-32	77.59	NAC domain-containing protein 35 [Benincasa hispida]	[more]
XP_011650588.1	4.2e-32	73.60	NAC domain-containing protein 35 [Cucumis sativus] >KGN56295.1 hypothetical prot...	[more]
XP_008452197.1	4.6e-31	74.58	PREDICTED: NAC domain-containing protein 55 [Cucumis melo]	[more]
KAA0060495.1	4.6e-31	74.58	NAC domain-containing protein 55 [Cucumis melo var. makuwa] >TYK18577.1 NAC doma...	[more]

BLAST of Sgr029877.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr029877.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7N2	1.0e-36	77.60	NAC domain-containing protein 35 OS=Momordica charantia OX=3673 GN=LOC111008182 ...	[more]
A0A0A0L2S0	2.0e-32	73.60	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G113370 PE=4 SV...	[more]
A0A5A7V3R0	2.2e-31	74.58	NAC domain-containing protein 55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BTB3	2.2e-31	74.58	NAC domain-containing protein 55 OS=Cucumis melo OX=3656 GN=LOC103493289 PE=4 SV...	[more]
A0A6J1EM76	1.6e-21	55.30	NAC domain-containing protein 35 OS=Cucurbita moschata OX=3662 GN=LOC111435880 P...	[more]

BLAST of Sgr029877.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr029877	Sgr029877	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr029877.1.exon1	Sgr029877.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr029877.1	cds.Sgr029877.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr029877.1	Sgr029877.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding