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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACCCTGCTCAGCCTAAACGTGGCTTCGCTTCCTCTGCTCACGACGATGCCCGTAAATTTCTCTCGCTGTCTTGCACTCGCACACATACACGCAGCGTATCTGCCCACGAAGAGATAATTTTGTTTGTAATCGAAATCTCTTTGGTATTTCTGATCGTGGTCGTTATGCGCTGCAATTGA mRNA sequence ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACCCTGCTCAGCCTAAACGTGGCTTCGCTTCCTCTGCTCACGACGATGCCCGTAAATTTCTCTCGCTGTCTTGCACTCGCACACATACACGCAGCGTATCTGCCCACGAAGAGATAATTTTGTTTGTAATCGAAATCTCTTTGGTATTTCTGATCGTGGTCGTTATGCGCTGCAATTGA Coding sequence (CDS) ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACCCTGCTCAGCCTAAACGTGGCTTCGCTTCCTCTGCTCACGACGATGCCCGTAAATTTCTCTCGCTGTCTTGCACTCGCACACATACACGCAGCGTATCTGCCCACGAAGAGATAATTTTGTTTGTAATCGAAATCTCTTTGGTATTTCTGATCGTGGTCGTTATGCGCTGCAATTGA Protein sequence MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARKFLSLSCTRTHTRSVSAHEEIILFVIEISLVFLIVVVMRCN
Homology
BLAST of Sgr020667 vs. NCBI nr
Match: XP_022984430.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09 Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
MAMA IRSNLLRAAFRGASRNPAQPKRGFASSAHDDAR+
Sbjct: 1 MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARE 39
BLAST of Sgr020667 vs. NCBI nr
Match: KAG7015416.1 (Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09 Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDAR+
Sbjct: 1 MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARE 39
BLAST of Sgr020667 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6577328.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09 Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDAR+
Sbjct: 1 MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARE 39
BLAST of Sgr020667 vs. NCBI nr
Match: XP_022941809.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6600678.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031316.1 Cytochrome c oxidase subunit 6a, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08 Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDA 38
MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDA
Sbjct: 1 MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA 37
BLAST of Sgr020667 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08 Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
MAMATIRSNLLRAA RGASRN AQPKRGFASSAHDDAR+
Sbjct: 1 MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARE 39
BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09 Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
MAMA IRSNLLRAAFRGASRNPAQPKRGFASSAHDDAR+
Sbjct: 1 MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARE 39
BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09 Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDAR+
Sbjct: 1 MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARE 39
BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1FPI8 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447063 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 8.1e-09 Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDA 38
MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDA
Sbjct: 1 MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA 37
BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1C3V4 (cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008246 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
MAMATIRSNLLRAAFRGAS+N AQPKRGFASSAHDD R+
Sbjct: 1 MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRE 39
BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 4.0e-08 Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0
Query: 1 MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDA 38
MAMATIRSNLLRAA RGASRN AQPKRGFASSAHDDA
Sbjct: 1 MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDA 37
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022984430.1 | 2.6e-09 | 94.87 | cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima] | [more] |
| KAG7015416.1 | 4.4e-09 | 94.87 | Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma ... | [more] |
| XP_022929363.1 | 4.4e-09 | 94.87 | cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG657... | [more] |
| XP_022941809.1 | 1.7e-08 | 97.30 | cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG660... | [more] |
| XP_023551866.1 | 2.2e-08 | 92.31 | cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1J8L1 | 1.2e-09 | 94.87 | cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... | [more] |
| A0A6J1ERW3 | 2.1e-09 | 94.87 | cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366... | [more] |
| A0A6J1FPI8 | 8.1e-09 | 97.30 | cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366... | [more] |
| A0A6J1C3V4 | 1.8e-08 | 89.74 | cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN... | [more] |
| A0A6J1KMD3 | 4.0e-08 | 94.59 | cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0022900 |
electron transport chain |
| biological_process |
GO:1902600 |
proton transmembrane transport |
| cellular_component |
GO:0005751 |
mitochondrial respiratory chain complex IV |
| molecular_function |
GO:0004129 |
cytochrome-c oxidase activity |
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