Sgr020667 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr020667
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Location	tig00153552: 1001753 .. 1001992 (+)
RNA-Seq Expression	Sgr020667
Synteny	Sgr020667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACCCTGCTCAGCCTAAACGTGGCTTCGCTTCCTCTGCTCACGACGATGCCCGTAAATTTCTCTCGCTGTCTTGCACTCGCACACATACACGCAGCGTATCTGCCCACGAAGAGATAATTTTGTTTGTAATCGAAATCTCTTTGGTATTTCTGATCGTGGTCGTTATGCGCTGCAATTGA

mRNA sequence

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACCCTGCTCAGCCTAAACGTGGCTTCGCTTCCTCTGCTCACGACGATGCCCGTAAATTTCTCTCGCTGTCTTGCACTCGCACACATACACGCAGCGTATCTGCCCACGAAGAGATAATTTTGTTTGTAATCGAAATCTCTTTGGTATTTCTGATCGTGGTCGTTATGCGCTGCAATTGA

Coding sequence (CDS)

ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCGAAACCCTGCTCAGCCTAAACGTGGCTTCGCTTCCTCTGCTCACGACGATGCCCGTAAATTTCTCTCGCTGTCTTGCACTCGCACACATACACGCAGCGTATCTGCCCACGAAGAGATAATTTTGTTTGTAATCGAAATCTCTTTGGTATTTCTGATCGTGGTCGTTATGCGCTGCAATTGA

Protein sequence

MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARKFLSLSCTRTHTRSVSAHEEIILFVIEISLVFLIVVVMRCN

Homology

[Close]

BLAST of Sgr020667 vs. NCBI nr
Match: XP_022984430.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
          MAMA IRSNLLRAAFRGASRNPAQPKRGFASSAHDDAR+
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARE 39

[Close]

BLAST of Sgr020667 vs. NCBI nr
Match: KAG7015416.1 (Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
          MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDAR+
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARE 39

[Close]

BLAST of Sgr020667 vs. NCBI nr
Match: XP_022929363.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6577328.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
          MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDAR+
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARE 39

[Close]

BLAST of Sgr020667 vs. NCBI nr
Match: XP_022941809.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6600678.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031316.1 Cytochrome c oxidase subunit 6a, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDA 38
          MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDA
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA 37

[Close]

BLAST of Sgr020667 vs. NCBI nr
Match: XP_023551866.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
          MAMATIRSNLLRAA RGASRN AQPKRGFASSAHDDAR+
Sbjct: 1  MAMATIRSNLLRAALRGASRNSAQPKRGFASSAHDDARE 39

[Close]

BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
          MAMA IRSNLLRAAFRGASRNPAQPKRGFASSAHDDAR+
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARE 39

[Close]

BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
          MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDAR+
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARE 39

[Close]

BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1FPI8 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447063 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.1e-09
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDA 38
          MAMATIRSNLLRAAFRGASRN AQPKRGFASSAHDDA
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA 37

[Close]

BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1C3V4 (cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008246 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARK 40
          MAMATIRSNLLRAAFRGAS+N AQPKRGFASSAHDD R+
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRE 39

[Close]

BLAST of Sgr020667 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-08
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASRNPAQPKRGFASSAHDDA 38
          MAMATIRSNLLRAA RGASRN AQPKRGFASSAHDDA
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDA 37

The following BLAST results are available for this feature:

BLAST of Sgr020667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984430.1	2.6e-09	94.87	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]	[more]
KAG7015416.1	4.4e-09	94.87	Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma ...	[more]
XP_022929363.1	4.4e-09	94.87	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG657...	[more]
XP_022941809.1	1.7e-08	97.30	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG660...	[more]
XP_023551866.1	2.2e-08	92.31	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sgr020667 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr020667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J8L1	1.2e-09	94.87	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1ERW3	2.1e-09	94.87	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1FPI8	8.1e-09	97.30	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1C3V4	1.8e-08	89.74	cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KMD3	4.0e-08	94.59	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Sgr020667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr020667.1	Sgr020667.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
molecular_function	GO:0004129	cytochrome-c oxidase activity