Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTCTGAGGATTTCCTTTGCGTTGAAGCTCCTTCTCTTCTTCGCTCTGCTTCTCATCGCCTCTAGGGTTTCTGCGACGGAGAACACTCCTTCGCTCCACGAAGCTCGTGCTCGTAAGTTCTCTTTCCCCTTCTCTCATGCCTTCGATCCTCCATTCCAATGGCTAGCCCTTCCCTTCTGGTTCATCCTTTAGGGAAGCTTTAGTAGAAAGCCCTGAATTTAATTGTGTCGATATATCGACCTGCTTTGTGATTGATCGAAATTAGGTTAAATTAAAAATTGATTGCTTAAACTTTCATGATTTATCTCGTTTTAACGTTAAAAAATTTTATTTTAATTGTGTTTAGCATAAATTTTAAGTACACCATTGCCATATAAGATTCCTATTAAATTTAACGACAAGGACCCAAATGAGTTCTTATACAAAACTCAGAGTTTGTGTATATGCACGTATGAAAAATGAGAATAATAAGAAATGTTGTTTATTATTATCCGACTTAGGGTTTAAAGAATACCCATTTATAGAAACAGATTGTTTTGTGGCAAAATGCTTATTCAAAGAAGGGATTCGAGAAGACCTCTCTGAACTTAAACTTGTGAGACTTCGAACATTGATTCTCTAATTTAAAGTTTTATCCATTTAAATATAATTTATGTTACGAAATCTTCCAATGTTGTTGTTCATAGCTTTGCTAGACATTTTTTAAGGACTTTTTCTCGTTCGTGGTTTGATCAAAAGGAGATTTCGCCCTTTCGAAATCTTTTATTATATATATAAAAAGAAGAGATATCATCAAAGTTAATTTGGTAACAATTTATTTGTTTGAATTTTTGTTTATGTTTGAAGGTAAGTTGGGTATGGAGTATAGAACCGTTGGGAAGGCTACGTTGGAAGGAAAGAGAGCATCTTTGGATATCCCATGGAGAGGTGGTTATAATCCTCCAAACAACAACCCTTGA
mRNA sequence
ATGGCGTCTCTGAGGATTTCCTTTGCGTTGAAGCTCCTTCTCTTCTTCGCTCTGCTTCTCATCGCCTCTAGGGTTTCTGCGACGGAGAACACTCCTTCGCTCCACGAAGCTCGTGCTCGTAAGTTGGGTATGGAGTATAGAACCGTTGGGAAGGCTACGTTGGAAGGAAAGAGAGCATCTTTGGATATCCCATGGAGAGGTGGTTATAATCCTCCAAACAACAACCCTTGA
Coding sequence (CDS)
ATGGCGTCTCTGAGGATTTCCTTTGCGTTGAAGCTCCTTCTCTTCTTCGCTCTGCTTCTCATCGCCTCTAGGGTTTCTGCGACGGAGAACACTCCTTCGCTCCACGAAGCTCGTGCTCGTAAGTTGGGTATGGAGTATAGAACCGTTGGGAAGGCTACGTTGGAAGGAAAGAGAGCATCTTTGGATATCCCATGGAGAGGTGGTTATAATCCTCCAAACAACAACCCTTGA
Protein sequence
MASLRISFALKLLLFFALLLIASRVSATENTPSLHEARARKLGMEYRTVGKATLEGKRASLDIPWRGGYNPPNNNP
Homology
BLAST of Sgr001920 vs. NCBI nr
Match:
XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])
HSP 1 Score: 101.3 bits (251), Expect = 3.8e-18
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0
Query: 1 MASLRISFALKLLLFFALLLIASRVSATENTPSLHE-ARARKLGMEYRTVGKATLEGKRA 60
MASLRISF LK L FFALLLIASRVSA +TPS+H+ R RKLGMEYR+VGKA L K A
Sbjct: 42 MASLRISFVLK-LFFFALLLIASRVSA--STPSIHKRPRIRKLGMEYRSVGKAVLRAKAA 101
Query: 61 SLDIPWRGGYNPPNNNP 77
S D PW+GGYNPPNNNP
Sbjct: 102 SYDFPWKGGYNPPNNNP 115
BLAST of Sgr001920 vs. NCBI nr
Match:
KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 1 MASLR-ISFALKLLLFFALLLIASRVSATENTPSLHEARARKLGMEYRTVGKATLEGK-- 60
M SL+ ISF LKLL+ FALLLIAS +SA +NTP R RK+GMEY+ VGKA + K
Sbjct: 1 MVSLKMISFVLKLLVCFALLLIASPISAMDNTP-----RIRKMGMEYKLVGKAVVVAKPV 60
Query: 61 -RASLDIPWRGGYNPP 73
+ S D PW GGY+ P
Sbjct: 61 RQLSADSPWGGGYHIP 71
BLAST of Sgr001920 vs. NCBI nr
Match:
TYK18975.1 (hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa])
HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 0
Query: 1 MASLRISFALKLLLFFALLLIASRVSATENTPSLHEARAR-KLGMEYRTVGKATLEGKRA 60
MAS+ I + + LLFF LLLI ++T P LHE R R K+ MEYR+V K L K A
Sbjct: 1 MASINIIWIIFKLLFFTLLLI---TTSTAFQPQLHEPRFRKKMRMEYRSVRKGALGAKPA 60
Query: 61 SLDIPWRGGYNPPNNN 76
D PW+GGYNPP+NN
Sbjct: 61 VYDFPWKGGYNPPDNN 73
BLAST of Sgr001920 vs. NCBI nr
Match:
KAG6602002.1 (hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query: 1 MASLRISFALKLLLFFALLLIASRVSATENTPSLHEARARKLGMEYRTVGKATLEGKRAS 60
M S +IS AL F ALLL+A VSA + + S + RKL MEY TV KA L K A
Sbjct: 1 MGSHKISMALP--FFLALLLVAFTVSAADISASFQKPHIRKLSMEYTTVEKAALRAKPAV 60
Query: 61 LDIPWRGGYNPPNNN 76
D PW+GGY+PP N+
Sbjct: 61 YDFPWKGGYHPPAND 73
BLAST of Sgr001920 vs. NCBI nr
Match:
KGN53822.1 (hypothetical protein Csa_015192 [Cucumis sativus])
HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 1 MASL-RISFALKLLLFFALLLIASRVSATENTPSLHEARAR-KLGMEYRTVGKATLEGKR 60
MAS+ I + LLFF LLLI +++ P LHE R K+ MEYR+V KA L GK
Sbjct: 1 MASINNIILIIFKLLFFTLLLI---TTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKP 60
Query: 61 ASLDIPWRGGYNPPNNN 76
A D PW+GGYNPP+NN
Sbjct: 61 AVYDFPWKGGYNPPHNN 74
BLAST of Sgr001920 vs. ExPASy TrEMBL
Match:
A0A6J1CHY3 (uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011803 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0
Query: 1 MASLRISFALKLLLFFALLLIASRVSATENTPSLHE-ARARKLGMEYRTVGKATLEGKRA 60
MASLRISF LK L FFALLLIASRVSA +TPS+H+ R RKLGMEYR+VGKA L K A
Sbjct: 42 MASLRISFVLK-LFFFALLLIASRVSA--STPSIHKRPRIRKLGMEYRSVGKAVLRAKAA 101
Query: 61 SLDIPWRGGYNPPNNNP 77
S D PW+GGYNPPNNNP
Sbjct: 102 SYDFPWKGGYNPPNNNP 115
BLAST of Sgr001920 vs. ExPASy TrEMBL
Match:
A0A5D3D619 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00680 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 0
Query: 1 MASLRISFALKLLLFFALLLIASRVSATENTPSLHEARAR-KLGMEYRTVGKATLEGKRA 60
MAS+ I + + LLFF LLLI ++T P LHE R R K+ MEYR+V K L K A
Sbjct: 1 MASINIIWIIFKLLFFTLLLI---TTSTAFQPQLHEPRFRKKMRMEYRSVRKGALGAKPA 60
Query: 61 SLDIPWRGGYNPPNNN 76
D PW+GGYNPP+NN
Sbjct: 61 VYDFPWKGGYNPPDNN 73
BLAST of Sgr001920 vs. ExPASy TrEMBL
Match:
A0A0A0KZM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152270 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 1 MASL-RISFALKLLLFFALLLIASRVSATENTPSLHEARAR-KLGMEYRTVGKATLEGKR 60
MAS+ I + LLFF LLLI +++ P LHE R K+ MEYR+V KA L GK
Sbjct: 1 MASINNIILIIFKLLFFTLLLI---TTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKP 60
Query: 61 ASLDIPWRGGYNPPNNN 76
A D PW+GGYNPP+NN
Sbjct: 61 AVYDFPWKGGYNPPHNN 74
BLAST of Sgr001920 vs. ExPASy TrEMBL
Match:
A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 37/75 (49.33%), Postives = 45/75 (60.00%), Query Frame = 0
Query: 4 LRISFALKLLLFFALLLIAS-RVSATENTPSLHEARARKLGMEYRTVGKATLEGK---RA 63
++IS LKLL F LL IAS VSAT N P LH+ RK+G+EY+ KA + K
Sbjct: 6 MKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPT 65
Query: 64 SLDIPWRGGY--NPP 73
S D+PW GGY PP
Sbjct: 66 SDDVPWGGGYVHRPP 80
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022141390.1 | 3.8e-18 | 75.32 | uncharacterized protein LOC111011803 [Momordica charantia] | [more] |
| KAG6600177.1 | 1.0e-07 | 56.58 | hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| TYK18975.1 | 1.4e-07 | 52.63 | hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa] | [more] |
| KAG6602002.1 | 5.2e-07 | 50.67 | hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN53822.1 | 3.3e-06 | 51.95 | hypothetical protein Csa_015192 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CHY3 | 1.8e-18 | 75.32 | uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
| A0A5D3D619 | 6.6e-08 | 52.63 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0KZM0 | 1.6e-06 | 51.95 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152270 PE=4 SV=1 | [more] |
| A0A5D3DJ60 | 4.4e-04 | 49.33 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
