Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAGTCTCTTCGCCTGAGATCCCACCGACCAAAGCTTCTTGCTTCTTCTCCAGCAGATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGGTTGACCCATGACTTTGTGAAACTTTTTTCCGGCGTTGGGATTTTACCACGCCGTCAATAACCACTATAATTGCTCTCTTTCGGCCTCGTCGGCGTCTCTCTGTTCTTCCCCTGTTTCCGGCTCTGTTTCTAACAGCCCCTCCGCTATAATTAGCCACGGTAGGATACTGGATTGTTAAAATTGTAGGAATCTTATTGGGTTTTCTGATGGAAATTTTGAACTGGGTTTTGCAGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA
mRNA sequence
ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGCCCCTCCGCTATAATTAGCCACGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA
Coding sequence (CDS)
ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGCCCCTCCGCTATAATTAGCCACGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA
Protein sequence
MNSPRRRRRPLIFSDDLTGSFNFRQRPPSPSFNWRRNPPSNADYHRPAPLHSTSSSPGRRTSTVRRPGSAAKPKTRSAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY
Homology
BLAST of Sed0027949 vs. NCBI nr
Match:
XP_022962884.1 (uncharacterized protein LOC111463251 [Cucurbita moschata] >KAG6595037.1 hypothetical protein SDJN03_11590, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152
BLAST of Sed0027949 vs. NCBI nr
Match:
XP_022133086.1 (uncharacterized protein LOC111005768 [Momordica charantia])
HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152
BLAST of Sed0027949 vs. NCBI nr
Match:
XP_023518715.1 (uncharacterized protein LOC111782145 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152
BLAST of Sed0027949 vs. NCBI nr
Match:
XP_023003217.1 (uncharacterized protein LOC111496895 [Cucurbita maxima])
HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152
BLAST of Sed0027949 vs. NCBI nr
Match:
XP_038881139.1 (uncharacterized protein LOC120072737 [Benincasa hispida])
HSP 1 Score: 60.1 bits (144), Expect = 1.7e-05
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0
Query: 77 SAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SA +SP + + V S+ SP+AIIS+GEN +TVKARLKQW+Q VACSVRQY
Sbjct: 103 SASLCSSPVS--DSVSPSSVNSPAAIISYGENPQTVKARLKQWAQVVACSVRQY 154
BLAST of Sed0027949 vs. ExPASy TrEMBL
Match:
A0A6J1KLU9 (uncharacterized protein LOC111496895 OS=Cucurbita maxima OX=3661 GN=LOC111496895 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152
BLAST of Sed0027949 vs. ExPASy TrEMBL
Match:
A0A6J1BU15 (uncharacterized protein LOC111005768 OS=Momordica charantia OX=3673 GN=LOC111005768 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152
BLAST of Sed0027949 vs. ExPASy TrEMBL
Match:
A0A6J1HIC1 (uncharacterized protein LOC111463251 OS=Cucurbita moschata OX=3662 GN=LOC111463251 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152
BLAST of Sed0027949 vs. ExPASy TrEMBL
Match:
A0A6J1IVC7 (uncharacterized protein LOC111478729 OS=Cucurbita maxima OX=3661 GN=LOC111478729 PE=4 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0
Query: 98 SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SP+AIIS GEN +TVKARLKQW+Q VACSVRQY
Sbjct: 122 SPAAIISLGENPQTVKARLKQWAQVVACSVRQY 154
BLAST of Sed0027949 vs. ExPASy TrEMBL
Match:
A0A5D3CRC3 (Membrane insertase YidC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004830 PE=4 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0
Query: 77 SAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
SA +SP + + V S SP+AIISHGEN + VKARLKQW+Q VACSVRQY
Sbjct: 103 SASLCSSPVS--DSVSPSADGSPAAIISHGENPQMVKARLKQWAQVVACSVRQY 154
BLAST of Sed0027949 vs. TAIR 10
Match:
AT4G33985.1 (Protein of unknown function (DUF1685) )
HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0
Query: 80 ARASPTTTLNWVL--GSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
+R S T++L+ + G S + I+ G++ ET+K RLKQW+Q VACSV+Q+
Sbjct: 97 SRLSRTSSLSSIASEGENSNSSTTIVDQGDDPETMKLRLKQWAQVVACSVKQF 149
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022962884.1 | 3.3e-06 | 84.85 | uncharacterized protein LOC111463251 [Cucurbita moschata] >KAG6595037.1 hypothet... | [more] |
| XP_022133086.1 | 3.3e-06 | 84.85 | uncharacterized protein LOC111005768 [Momordica charantia] | [more] |
| XP_023518715.1 | 3.3e-06 | 84.85 | uncharacterized protein LOC111782145 [Cucurbita pepo subsp. pepo] | [more] |
| XP_023003217.1 | 3.3e-06 | 84.85 | uncharacterized protein LOC111496895 [Cucurbita maxima] | [more] |
| XP_038881139.1 | 1.7e-05 | 61.11 | uncharacterized protein LOC120072737 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1KLU9 | 1.6e-06 | 84.85 | uncharacterized protein LOC111496895 OS=Cucurbita maxima OX=3661 GN=LOC111496895... | [more] |
| A0A6J1BU15 | 1.6e-06 | 84.85 | uncharacterized protein LOC111005768 OS=Momordica charantia OX=3673 GN=LOC111005... | [more] |
| A0A6J1HIC1 | 1.6e-06 | 84.85 | uncharacterized protein LOC111463251 OS=Cucurbita moschata OX=3662 GN=LOC1114632... | [more] |
| A0A6J1IVC7 | 3.1e-05 | 81.82 | uncharacterized protein LOC111478729 OS=Cucurbita maxima OX=3661 GN=LOC111478729... | [more] |
| A0A5D3CRC3 | 3.1e-05 | 61.11 | Membrane insertase YidC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G33985.1 | 1.0e-05 | 43.40 | Protein of unknown function (DUF1685) | [more] |
