Sed0027949.1 (mRNA) Chayote v1

Overview


Name	Sed0027949.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Membrane insertase YidC
Location	LG11: 1026675 .. 1027331 (-)
Sequence length	393
RNA-Seq Expression	Sed0027949.1
Synteny	Sed0027949.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAGTCTCTTCGCCTGAGATCCCACCGACCAAAGCTTCTTGCTTCTTCTCCAGCAGATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGGTTGACCCATGACTTTGTGAAACTTTTTTCCGGCGTTGGGATTTTACCACGCCGTCAATAACCACTATAATTGCTCTCTTTCGGCCTCGTCGGCGTCTCTCTGTTCTTCCCCTGTTTCCGGCTCTGTTTCTAACAGCCCCTCCGCTATAATTAGCCACGGTAGGATACTGGATTGTTAAAATTGTAGGAATCTTATTGGGTTTTCTGATGGAAATTTTGAACTGGGTTTTGCAGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA

mRNA sequence

ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGCCCCTCCGCTATAATTAGCCACGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA

Coding sequence (CDS)

ATGAACTCTCCTCGCCGGCGACGACGACCTCTCATCTTCTCCGACGATCTCACTGGGAGCTTTAATTTTCGGCAAAGGCCCCCGTCGCCGTCTTTCAATTGGAGACGGAATCCGCCGTCCAACGCCGACTACCACCGCCCAGCCCCTCTCCACTCTACAAGCAGCTCTCCTGGTCGCCGGACATCGACCGTGAGGAGGCCTGGCTCCGCCGCAAAACCAAAAACAAGATCCGCCGGAGCAAGAGCGTCACCGACGACGACCTTGAATTGGGTTTTGGGCTCAACTTGCCGGAGCCCCTCCGCTATAATTAGCCACGGGGAGAATACGGAGACGGTGAAAGCAAGGCTGAAACAATGGTCGCAAGCGGTTGCTTGTTCAGTACGGCAGTATTGA

Protein sequence

MNSPRRRRRPLIFSDDLTGSFNFRQRPPSPSFNWRRNPPSNADYHRPAPLHSTSSSPGRRTSTVRRPGSAAKPKTRSAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY

Homology

[Close]

BLAST of Sed0027949.1 vs. NCBI nr
Match: XP_022962884.1 (uncharacterized protein LOC111463251 [Cucurbita moschata] >KAG6595037.1 hypothetical protein SDJN03_11590, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

[Close]

BLAST of Sed0027949.1 vs. NCBI nr
Match: XP_022133086.1 (uncharacterized protein LOC111005768 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

[Close]

BLAST of Sed0027949.1 vs. NCBI nr
Match: XP_023518715.1 (uncharacterized protein LOC111782145 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

[Close]

BLAST of Sed0027949.1 vs. NCBI nr
Match: XP_023003217.1 (uncharacterized protein LOC111496895 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

[Close]

BLAST of Sed0027949.1 vs. NCBI nr
Match: XP_038881139.1 (uncharacterized protein LOC120072737 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-05
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 77  SAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SA   +SP +  + V  S+  SP+AIIS+GEN +TVKARLKQW+Q VACSVRQY
Sbjct: 103 SASLCSSPVS--DSVSPSSVNSPAAIISYGENPQTVKARLKQWAQVVACSVRQY 154

[Close]

BLAST of Sed0027949.1 vs. ExPASy TrEMBL
Match: A0A6J1KLU9 (uncharacterized protein LOC111496895 OS=Cucurbita maxima OX=3661 GN=LOC111496895 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

[Close]

BLAST of Sed0027949.1 vs. ExPASy TrEMBL
Match: A0A6J1BU15 (uncharacterized protein LOC111005768 OS=Momordica charantia OX=3673 GN=LOC111005768 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

[Close]

BLAST of Sed0027949.1 vs. ExPASy TrEMBL
Match: A0A6J1HIC1 (uncharacterized protein LOC111463251 OS=Cucurbita moschata OX=3662 GN=LOC111463251 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIISHGEN +TVKARLKQW+Q VACSVRQY
Sbjct: 120 SPAAIISHGENPQTVKARLKQWAQVVACSVRQY 152

[Close]

BLAST of Sed0027949.1 vs. ExPASy TrEMBL
Match: A0A6J1IVC7 (uncharacterized protein LOC111478729 OS=Cucurbita maxima OX=3661 GN=LOC111478729 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 98  SPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SP+AIIS GEN +TVKARLKQW+Q VACSVRQY
Sbjct: 122 SPAAIISLGENPQTVKARLKQWAQVVACSVRQY 154

[Close]

BLAST of Sed0027949.1 vs. ExPASy TrEMBL
Match: A0A5D3CRC3 (Membrane insertase YidC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004830 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 77  SAGARASPTTTLNWVLGSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           SA   +SP +  + V  S   SP+AIISHGEN + VKARLKQW+Q VACSVRQY
Sbjct: 103 SASLCSSPVS--DSVSPSADGSPAAIISHGENPQMVKARLKQWAQVVACSVRQY 154

[Close]

BLAST of Sed0027949.1 vs. TAIR 10
Match: AT4G33985.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 80  ARASPTTTLNWVL--GSTCRSPSAIISHGENTETVKARLKQWSQAVACSVRQY 131
           +R S T++L+ +   G    S + I+  G++ ET+K RLKQW+Q VACSV+Q+
Sbjct: 97  SRLSRTSSLSSIASEGENSNSSTTIVDQGDDPETMKLRLKQWAQVVACSVKQF 149

The following BLAST results are available for this feature:

BLAST of Sed0027949.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962884.1	3.3e-06	84.85	uncharacterized protein LOC111463251 [Cucurbita moschata] >KAG6595037.1 hypothet...	[more]
XP_022133086.1	3.3e-06	84.85	uncharacterized protein LOC111005768 [Momordica charantia]	[more]
XP_023518715.1	3.3e-06	84.85	uncharacterized protein LOC111782145 [Cucurbita pepo subsp. pepo]	[more]
XP_023003217.1	3.3e-06	84.85	uncharacterized protein LOC111496895 [Cucurbita maxima]	[more]
XP_038881139.1	1.7e-05	61.11	uncharacterized protein LOC120072737 [Benincasa hispida]	[more]

BLAST of Sed0027949.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027949.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLU9	1.6e-06	84.85	uncharacterized protein LOC111496895 OS=Cucurbita maxima OX=3661 GN=LOC111496895...	[more]
A0A6J1BU15	1.6e-06	84.85	uncharacterized protein LOC111005768 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1HIC1	1.6e-06	84.85	uncharacterized protein LOC111463251 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]
A0A6J1IVC7	3.1e-05	81.82	uncharacterized protein LOC111478729 OS=Cucurbita maxima OX=3661 GN=LOC111478729...	[more]
A0A5D3CRC3	3.1e-05	61.11	Membrane insertase YidC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0027949.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33985.1	1.0e-05	43.40	Protein of unknown function (DUF1685)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0027949	Sed0027949	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027949.1-cds	Sed0027949.1-cds-LG11:1026675..1026751	CDS
Sed0027949.1-cds	Sed0027949.1-cds-LG11:1026827..1026849	CDS
Sed0027949.1-cds	Sed0027949.1-cds-LG11:1026986..1027181	CDS
Sed0027949.1-cds	Sed0027949.1-cds-LG11:1027235..1027331	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027949.1-exon	Sed0027949.1-exon-LG11:1026675..1026751	exon
Sed0027949.1-exon	Sed0027949.1-exon-LG11:1026827..1026849	exon
Sed0027949.1-exon	Sed0027949.1-exon-LG11:1026986..1027181	exon
Sed0027949.1-exon	Sed0027949.1-exon-LG11:1027235..1027331	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0027949.1	Sed0027949.1-protein	polypeptide