Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCAATTATAATTATGAGACCAAATGATTAAAAAAAAGGAATTTGGGAATCTCAAACATTATTGGGGAAAGACAAAGCAAGGCTGTCTTTGAAGCCACTCTGTTTTTTTTTTCTCTTCTCCTTTGTGTTATATAATATGTTTGCTATTTGCTTTTCATTTCAAACTTCTCACTCAAAAAACTTTCTCTCTCTAAACCTTTTTTTCTCTCTCTAGTGAAAATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCCTGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCACCAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCTCCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGTTAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAGATGGAAATTGGGTTTTTGAAAAAGCGGGTGGGTCGGCCGGGCCGGCGGTTCGATCGCCGGAGGGTGAGGTCCATTTTGGTGCTGGTTTAATTTAAATTGAAATTTCTGTAGTTGTTTTTAATTTCTTTGTATTTGTGTATGTTTTTGTGTGTGAGTTTGATTATTATTGTTGATTCGGCGATTCATTATTTGTAAAATGTGTGGGACACGTGGCGCTATTGTAGATTAATCGGTCGTGTACATCGGATTTATGAATAAAAACATACATTTCCATTC
mRNA sequence
GTGCAATTATAATTATGAGACCAAATGATTAAAAAAAAGGAATTTGGGAATCTCAAACATTATTGGGGAAAGACAAAGCAAGGCTGTCTTTGAAGCCACTCTGTTTTTTTTTTCTCTTCTCCTTTGTGTTATATAATATGTTTGCTATTTGCTTTTCATTTCAAACTTCTCACTCAAAAAACTTTCTCTCTCTAAACCTTTTTTTCTCTCTCTAGTGAAAATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCCTGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCACCAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCTCCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGTTAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAGATGGAAATTGGGTTTTTGAAAAAGCGGGTGGGTCGGCCGGGCCGGCGGTTCGATCGCCGGAGGGTGAGGTCCATTTTGGTGCTGGTTTAATTTAAATTGAAATTTCTGTAGTTGTTTTTAATTTCTTTGTATTTGTGTATGTTTTTGTGTGTGAGTTTGATTATTATTGTTGATTCGGCGATTCATTATTTGTAAAATGTGTGGGACACGTGGCGCTATTGTAGATTAATCGGTCGTGTACATCGGATTTATGAATAAAAACATACATTTCCATTC
Coding sequence (CDS)
ATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCCTGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCACCAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCTCCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGTTAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAG
Protein sequence
MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPTATPPTATPPTQPPATPPTSKNSSPPSPPPEGNAPTPGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
Homology
BLAST of Sed0027315 vs. NCBI nr
Match:
KAA0053440.1 (classical arabinogalactan protein 9 [Cucumis melo var. makuwa])
HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVM LAL ATSCMAQ P APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
TPPPATPPPA+ PP++PP + P A+PPT+ PP+ ++PPTA PP + P +PPT SSP
Sbjct: 63 TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122
Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PSPPPEGN PT PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of Sed0027315 vs. NCBI nr
Match:
TYK14854.1 (vegetative cell wall protein gp1 [Cucumis melo var. makuwa])
HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVM LAL ATSCMAQ P APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
TPPPATPPPA+ PP++PP + P A+PPT+ PP+ ++PPTA PP + P +PPT SSP
Sbjct: 63 TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122
Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PSPPPEGN PT PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of Sed0027315 vs. NCBI nr
Match:
XP_008455676.1 (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])
HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVM LAL ATSCMAQ P APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 60
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
TPPPATPPPA+ PP++PP + P A+PPT+ PP+ ++PPTA PP + P +PPT SSP
Sbjct: 61 TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 120
Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PSPPPEGN PT PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 121 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164
BLAST of Sed0027315 vs. NCBI nr
Match:
XP_023545089.1 (classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 124.8 bits (312), Expect = 7.1e-25
Identity = 118/175 (67.43%), Postives = 137/175 (78.29%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPP-ATPPP 60
MG F+M+LA LATS MAQ P APAQPPTTPAVPPP +TPPPAA+PPPATPPP ATPPP
Sbjct: 1 MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPP-STPPPAASPPPATPPPAATPPP 60
Query: 61 ATPPPATPPPATPPPATPPPATPPTATP--PTATPPTATPPTAT---PPTQPPATPPTSK 120
ATPPPATPPPATPPPATPP ATPP++ P P ATPPT+ PT++ PP + PA+ P+
Sbjct: 61 ATPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTPPPKEGPASSPSPS 120
Query: 121 NSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
+SPPSPP EGN P+ PGPN PPPPE NGA ++SR ++G AV+G LAMVFA
Sbjct: 121 TASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 173
BLAST of Sed0027315 vs. NCBI nr
Match:
KAG6600667.1 (hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 118.2 bits (295), Expect = 6.6e-23
Identity = 118/177 (66.67%), Postives = 135/177 (76.27%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPA-TPPP 60
MG F+MVLA LATS MAQ P APAQPPTTPAVPPP +TPPPAA+PPPATPPPA TPPP
Sbjct: 3 MGIQFLMVLACLATSSMAQAPGAAPAQPPTTPAVPPP-STPPPAASPPPATPPPATTPPP 62
Query: 61 ATPPPATPPPATPPPATPPPATPPT---ATPPTATPPTAT---PPTATPPTQP-PATPPT 120
ATPPPATPPPATPPPATPP ATPP+ ATPPT+ PT++ PP P + P P+ P+
Sbjct: 63 ATPPPATPPPATPPPATPPSATPPSQPPATPPTSPAPTSSPTPPPKEGPASSPSPSPSPS 122
Query: 121 SKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
+SPPSPP EGN P+ PGPN PPPPE NGA ++SR ++G AV+G LAMVFA
Sbjct: 123 PSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 177
BLAST of Sed0027315 vs. ExPASy TrEMBL
Match:
A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 7.6e-33
Identity = 127/171 (74.27%), Postives = 146/171 (85.38%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVM LAL ATSCMAQ P APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
TPPPATPPPA+ PP++PP + P A+PPT+ PP+ ++PPTA PP + P +PPT SSP
Sbjct: 63 TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122
Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PSPPPEGN PT PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAMVFA
Sbjct: 123 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166
BLAST of Sed0027315 vs. ExPASy TrEMBL
Match:
A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 9.9e-33
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVM LAL ATSCMAQ P APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
TPPPATPPPA+ PP++PP + P A+PPT+ PP+ ++PPTA PP + P +PPT SSP
Sbjct: 63 TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122
Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PSPPPEGN PT PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of Sed0027315 vs. ExPASy TrEMBL
Match:
A0A5A7UE17 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001110 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 9.9e-33
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVM LAL ATSCMAQ P APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
TPPPATPPPA+ PP++PP + P A+PPT+ PP+ ++PPTA PP + P +PPT SSP
Sbjct: 63 TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122
Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PSPPPEGN PT PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166
BLAST of Sed0027315 vs. ExPASy TrEMBL
Match:
A0A1S3C1K1 (vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 9.9e-33
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVM LAL ATSCMAQ P APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 1 MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 60
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
TPPPATPPPA+ PP++PP + P A+PPT+ PP+ ++PPTA PP + P +PPT SSP
Sbjct: 61 TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 120
Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PSPPPEGN PT PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 121 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164
BLAST of Sed0027315 vs. ExPASy TrEMBL
Match:
A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 7.9e-22
Identity = 112/169 (66.27%), Postives = 125/169 (73.96%), Query Frame = 0
Query: 1 MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
MGF FVMVLAL ATS MAQ P APAQPPTTPAVPPP +TPPP PATPPPA A
Sbjct: 3 MGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPP-STPPPVVA--PATPPPA----A 62
Query: 61 TPPPATPPPATPPPATPPPATPPTATPPTATPPTATPPTATPPTQPPATPPTSKNSSPPS 120
TPPPATPPPA PP + PP++PP T P A+PPT+ P PP + PA+ PT ++SPPS
Sbjct: 63 TPPPATPPPAVTPPPSQPPSSPP--TQPPASPPTSPTP---PPKEGPASSPTPSSASPPS 122
Query: 121 PPPEGNAP--TPGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
PP EG P +PGPN PPPPP NGAA VSRGV++GGAVAGA LAMVFA
Sbjct: 123 PPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0053440.1 | 2.0e-32 | 73.68 | classical arabinogalactan protein 9 [Cucumis melo var. makuwa] | [more] |
| TYK14854.1 | 2.0e-32 | 73.68 | vegetative cell wall protein gp1 [Cucumis melo var. makuwa] | [more] |
| XP_008455676.1 | 2.0e-32 | 73.68 | PREDICTED: vegetative cell wall protein gp1 [Cucumis melo] | [more] |
| XP_023545089.1 | 7.1e-25 | 67.43 | classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6600667.1 | 6.6e-23 | 66.67 | hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L0L1 | 7.6e-33 | 74.27 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1 | [more] |
| A0A5D3CV77 | 9.9e-33 | 73.68 | Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
| A0A5A7UE17 | 9.9e-33 | 73.68 | Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
| A0A1S3C1K1 | 9.9e-33 | 73.68 | vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV... | [more] |
| A0A6J1J5L5 | 7.9e-22 | 66.27 | classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
