Sed0027315.1 (mRNA) Chayote v1

Overview


Name	Sed0027315.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Classical arabinogalactan protein 9
Location	LG13: 6670803 .. 6671802 (-)
Sequence length	1000
RNA-Seq Expression	Sed0027315.1
Synteny	Sed0027315.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCAATTATAATTATGAGACCAAATGATTAAAAAAAAGGAATTTGGGAATCTCAAACATTATTGGGGAAAGACAAAGCAAGGCTGTCTTTGAAGCCACTCTGTTTTTTTTTTCTCTTCTCCTTTGTGTTATATAATATGTTTGCTATTTGCTTTTCATTTCAAACTTCTCACTCAAAAAACTTTCTCTCTCTAAACCTTTTTTTCTCTCTCTAGTGAAAATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCCTGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCACCAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCTCCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGTTAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAGATGGAAATTGGGTTTTTGAAAAAGCGGGTGGGTCGGCCGGGCCGGCGGTTCGATCGCCGGAGGGTGAGGTCCATTTTGGTGCTGGTTTAATTTAAATTGAAATTTCTGTAGTTGTTTTTAATTTCTTTGTATTTGTGTATGTTTTTGTGTGTGAGTTTGATTATTATTGTTGATTCGGCGATTCATTATTTGTAAAATGTGTGGGACACGTGGCGCTATTGTAGATTAATCGGTCGTGTACATCGGATTTATGAATAAAAACATACATTTCCATTC

mRNA sequence

GTGCAATTATAATTATGAGACCAAATGATTAAAAAAAAGGAATTTGGGAATCTCAAACATTATTGGGGAAAGACAAAGCAAGGCTGTCTTTGAAGCCACTCTGTTTTTTTTTTCTCTTCTCCTTTGTGTTATATAATATGTTTGCTATTTGCTTTTCATTTCAAACTTCTCACTCAAAAAACTTTCTCTCTCTAAACCTTTTTTTCTCTCTCTAGTGAAAATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCCTGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCACCAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCTCCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGTTAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAGATGGAAATTGGGTTTTTGAAAAAGCGGGTGGGTCGGCCGGGCCGGCGGTTCGATCGCCGGAGGGTGAGGTCCATTTTGGTGCTGGTTTAATTTAAATTGAAATTTCTGTAGTTGTTTTTAATTTCTTTGTATTTGTGTATGTTTTTGTGTGTGAGTTTGATTATTATTGTTGATTCGGCGATTCATTATTTGTAAAATGTGTGGGACACGTGGCGCTATTGTAGATTAATCGGTCGTGTACATCGGATTTATGAATAAAAACATACATTTCCATTC

Coding sequence (CDS)

ATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCCTGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCACCAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCTCCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGTTAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAG

Protein sequence

MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPTATPPTATPPTQPPATPPTSKNSSPPSPPPEGNAPTPGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

Homology

[Close]

BLAST of Sed0027315.1 vs. NCBI nr
Match: KAA0053440.1 (classical arabinogalactan protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
           TPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PPTA PP + P +PPT   SSP
Sbjct: 63  TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122

Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of Sed0027315.1 vs. NCBI nr
Match: TYK14854.1 (vegetative cell wall protein gp1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
           TPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PPTA PP + P +PPT   SSP
Sbjct: 63  TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122

Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of Sed0027315.1 vs. NCBI nr
Match: XP_008455676.1 (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 60

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
           TPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PPTA PP + P +PPT   SSP
Sbjct: 61  TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 120

Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 121 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

[Close]

BLAST of Sed0027315.1 vs. NCBI nr
Match: XP_023545089.1 (classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 7.1e-25
Identity = 118/175 (67.43%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPP-ATPPP 60
           MG  F+M+LA LATS MAQ P  APAQPPTTPAVPPP +TPPPAA+PPPATPPP ATPPP
Sbjct: 1   MGIQFLMLLACLATSSMAQAPGAAPAQPPTTPAVPPP-STPPPAASPPPATPPPAATPPP 60

Query: 61  ATPPPATPPPATPPPATPPPATPPTATP--PTATPPTATPPTAT---PPTQPPATPPTSK 120
           ATPPPATPPPATPPPATPP ATPP++ P  P ATPPT+  PT++   PP + PA+ P+  
Sbjct: 61  ATPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTPPPKEGPASSPSPS 120

Query: 121 NSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
            +SPPSPP EGN P+  PGPN  PPPPE NGA ++SR  ++G AV+G  LAMVFA
Sbjct: 121 TASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 173

[Close]

BLAST of Sed0027315.1 vs. NCBI nr
Match: KAG6600667.1 (hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 6.6e-23
Identity = 118/177 (66.67%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPA-TPPP 60
           MG  F+MVLA LATS MAQ P  APAQPPTTPAVPPP +TPPPAA+PPPATPPPA TPPP
Sbjct: 3   MGIQFLMVLACLATSSMAQAPGAAPAQPPTTPAVPPP-STPPPAASPPPATPPPATTPPP 62

Query: 61  ATPPPATPPPATPPPATPPPATPPT---ATPPTATPPTAT---PPTATPPTQP-PATPPT 120
           ATPPPATPPPATPPPATPP ATPP+   ATPPT+  PT++   PP   P + P P+  P+
Sbjct: 63  ATPPPATPPPATPPPATPPSATPPSQPPATPPTSPAPTSSPTPPPKEGPASSPSPSPSPS 122

Query: 121 SKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
              +SPPSPP EGN P+  PGPN  PPPPE NGA ++SR  ++G AV+G  LAMVFA
Sbjct: 123 PSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 177

[Close]

BLAST of Sed0027315.1 vs. ExPASy TrEMBL
Match: A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 7.6e-33
Identity = 127/171 (74.27%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
           TPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PPTA PP + P +PPT   SSP
Sbjct: 63  TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122

Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAMVFA
Sbjct: 123 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

[Close]

BLAST of Sed0027315.1 vs. ExPASy TrEMBL
Match: A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.9e-33
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
           TPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PPTA PP + P +PPT   SSP
Sbjct: 63  TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122

Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of Sed0027315.1 vs. ExPASy TrEMBL
Match: A0A5A7UE17 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001110 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.9e-33
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 3   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 62

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
           TPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PPTA PP + P +PPT   SSP
Sbjct: 63  TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 122

Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 123 PSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of Sed0027315.1 vs. ExPASy TrEMBL
Match: A0A1S3C1K1 (vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.9e-33
Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPA
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPP-STPPPAASPPPATPPPATPPPA 60

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPPTATPPTQPPATPPTSKNSSP 120
           TPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PPTA PP + P +PPT   SSP
Sbjct: 61  TPPPATPPPASTPPSSPP--SQPPASPPTSPPPSSPSSPPTA-PPKEGPISPPT---SSP 120

Query: 121 PSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Sbjct: 121 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

[Close]

BLAST of Sed0027315.1 vs. ExPASy TrEMBL
Match: A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.9e-22
Identity = 112/169 (66.27%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPA 60
           MGF FVMVLAL ATS MAQ P  APAQPPTTPAVPPP +TPPP     PATPPPA    A
Sbjct: 3   MGFQFVMVLALFATSSMAQAPGAAPAQPPTTPAVPPP-STPPPVVA--PATPPPA----A 62

Query: 61  TPPPATPPPATPPPATPPPATPPTATPPTATPPTATPPTATPPTQPPATPPTSKNSSPPS 120
           TPPPATPPPA  PP + PP++PP  T P A+PPT+  P   PP + PA+ PT  ++SPPS
Sbjct: 63  TPPPATPPPAVTPPPSQPPSSPP--TQPPASPPTSPTP---PPKEGPASSPTPSSASPPS 122

Query: 121 PPPEGNAP--TPGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA 168
           PP EG  P  +PGPN PPPPP  NGAA VSRGV++GGAVAGA LAMVFA
Sbjct: 123 PPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

The following BLAST results are available for this feature:

BLAST of Sed0027315.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053440.1	2.0e-32	73.68	classical arabinogalactan protein 9 [Cucumis melo var. makuwa]	[more]
TYK14854.1	2.0e-32	73.68	vegetative cell wall protein gp1 [Cucumis melo var. makuwa]	[more]
XP_008455676.1	2.0e-32	73.68	PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]	[more]
XP_023545089.1	7.1e-25	67.43	classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG6600667.1	6.6e-23	66.67	hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0027315.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027315.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0L1	7.6e-33	74.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1	[more]
A0A5D3CV77	9.9e-33	73.68	Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7UE17	9.9e-33	73.68	Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3C1K1	9.9e-33	73.68	vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV...	[more]
A0A6J1J5L5	7.9e-22	66.27	classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Sed0027315.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 67..88 score: 38.18 coord: 55..67 score: 53.85 coord: 35..51 score: 40.0 coord: 19..31 score: 36.92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..142

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0027315	Sed0027315	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027315.1-exon	Sed0027315.1-exon-LG13:6670803..6671802	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027315.1-three_prime_utr	Sed0027315.1-three_prime_utr-LG13:6670803..6671078	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027315.1-cds	Sed0027315.1-cds-LG13:6671079..6671582	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027315.1-five_prime_utr	Sed0027315.1-five_prime_utr-LG13:6671583..6671802	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0027315.1	Sed0027315.1-protein	polypeptide