Sed0022365 (gene) Chayote v1

Overview


Name	Sed0022365
Type	gene
Organism	Sechium edule (Chayote v1)
Description	STE20/SPS1-related proline-alanine-rich protein kinase-like
Location	LG06: 8101262 .. 8101667 (+)
RNA-Seq Expression	Sed0022365
Synteny	Sed0022365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAAATTCCCAAATTCTCAATTTCTTCAACAATTCCTTAAGAAAATCCTCTTCAATGGCTTCCAAGAATTTAATTGCTCTTCTCTTCGTTCTGGCTTTGGTAGCTTCCTCAGCTACGGCGGCGCACCACCATTCGCACCCGAATTCGCCGGCGCCAGCCCCTTCTCCGGCGGCCACCGTGGAGGCTCCATTTGTTGCTCCGGCTCCGGCGCCGAGCGCCGCCGCTTTTACTTCTGGATTTGGTTTTGCGGGATCTATGGCTGTTGCTGTTCTGGCTTCTGCTCTGTTTGTTTAGATGAATTTTTACATTTGATTAATGGGTTTTTTTGTTGTTGTTATTTGTTTAATCATATTTATATGATTTTGTTGTTTTATTATATCTTAATGAGATTATTATTATAATTA

mRNA sequence

CAACAAATTCCCAAATTCTCAATTTCTTCAACAATTCCTTAAGAAAATCCTCTTCAATGGCTTCCAAGAATTTAATTGCTCTTCTCTTCGTTCTGGCTTTGGTAGCTTCCTCAGCTACGGCGGCGCACCACCATTCGCACCCGAATTCGCCGGCGCCAGCCCCTTCTCCGGCGGCCACCGTGGAGGCTCCATTTGTTGCTCCGGCTCCGGCGCCGAGCGCCGCCGCTTTTACTTCTGGATTTGGTTTTGCGGGATCTATGGCTGTTGCTGTTCTGGCTTCTGCTCTGTTTGTTTAGATGAATTTTTACATTTGATTAATGGGTTTTTTTGTTGTTGTTATTTGTTTAATCATATTTATATGATTTTGTTGTTTTATTATATCTTAATGAGATTATTATTATAATTA

Coding sequence (CDS)

ATGGCTTCCAAGAATTTAATTGCTCTTCTCTTCGTTCTGGCTTTGGTAGCTTCCTCAGCTACGGCGGCGCACCACCATTCGCACCCGAATTCGCCGGCGCCAGCCCCTTCTCCGGCGGCCACCGTGGAGGCTCCATTTGTTGCTCCGGCTCCGGCGCCGAGCGCCGCCGCTTTTACTTCTGGATTTGGTTTTGCGGGATCTATGGCTGTTGCTGTTCTGGCTTCTGCTCTGTTTGTTTAG

Protein sequence

MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPAATVEAPFVAPAPAPSAAAFTSGFGFAGSMAVAVLASALFV

Homology

[Close]

BLAST of Sed0022365 vs. NCBI nr
Match: KGN43805.2 (hypothetical protein Csa_017194, partial [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1   MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPAATVEAPFVAPA-----PAPSA 60
           MAS++ + LL VLALVASSATA HHHSHP SPAPAPSP A VEAP V P+     P  + 
Sbjct: 90  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSP-AVVEAPSVPPSSISGTPVEAP 149

Query: 61  AAFTSGFGF-AGSMAVAV---LASALFV 80
           A   +G G  +GSMAV+V    A+ALFV
Sbjct: 150 APAANGAGLVSGSMAVSVGIFFAAALFV 176

[Close]

BLAST of Sed0022365 vs. NCBI nr
Match: XP_023554722.1 (uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ + +L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEAPLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of Sed0022365 vs. NCBI nr
Match: KAG6571852.1 (hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ + +L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of Sed0022365 vs. NCBI nr
Match: XP_022952911.1 (STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ +  L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of Sed0022365 vs. ExPASy TrEMBL
Match: A0A0A0K427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-08
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPAATVEAPFVAPA-----PAPSA 60
          MAS++ + LL VLALVASSATA HHHSHP SPAPAPSP A VEAP V P+     P  + 
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSP-AVVEAPSVPPSSISGTPVEAP 60

Query: 61 AAFTSGFGF-AGSMAVAV---LASALFV 80
          A   +G G  +GSMAV+V    A+ALFV
Sbjct: 61 APAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]

BLAST of Sed0022365 vs. ExPASy TrEMBL
Match: A0A6J1GLJ6 (STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschata OX=3662 GN=LOC111455452 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ +  L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

The following BLAST results are available for this feature:

BLAST of Sed0022365 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43805.2	1.4e-07	59.09	hypothetical protein Csa_017194, partial [Cucumis sativus]	[more]
XP_023554722.1	2.2e-05	53.49	uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo]	[more]
KAG6571852.1	2.2e-05	53.49	hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952911.1	3.8e-05	53.49	STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata]	[more]

BLAST of Sed0022365 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K427	6.8e-08	59.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1	[more]
A0A6J1GLJ6	1.9e-05	53.49	STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschat...	[more]

BLAST of Sed0022365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022365.1	Sed0022365.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity