Sed0022365.1 (mRNA) Chayote v1

Overview
NameSed0022365.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionSTE20/SPS1-related proline-alanine-rich protein kinase-like
LocationLG06: 8101262 .. 8101667 (+)
Sequence length406
RNA-Seq ExpressionSed0022365.1
SyntenySed0022365.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAAATTCCCAAATTCTCAATTTCTTCAACAATTCCTTAAGAAAATCCTCTTCAATGGCTTCCAAGAATTTAATTGCTCTTCTCTTCGTTCTGGCTTTGGTAGCTTCCTCAGCTACGGCGGCGCACCACCATTCGCACCCGAATTCGCCGGCGCCAGCCCCTTCTCCGGCGGCCACCGTGGAGGCTCCATTTGTTGCTCCGGCTCCGGCGCCGAGCGCCGCCGCTTTTACTTCTGGATTTGGTTTTGCGGGATCTATGGCTGTTGCTGTTCTGGCTTCTGCTCTGTTTGTTTAGATGAATTTTTACATTTGATTAATGGGTTTTTTTGTTGTTGTTATTTGTTTAATCATATTTATATGATTTTGTTGTTTTATTATATCTTAATGAGATTATTATTATAATTA

mRNA sequence

CAACAAATTCCCAAATTCTCAATTTCTTCAACAATTCCTTAAGAAAATCCTCTTCAATGGCTTCCAAGAATTTAATTGCTCTTCTCTTCGTTCTGGCTTTGGTAGCTTCCTCAGCTACGGCGGCGCACCACCATTCGCACCCGAATTCGCCGGCGCCAGCCCCTTCTCCGGCGGCCACCGTGGAGGCTCCATTTGTTGCTCCGGCTCCGGCGCCGAGCGCCGCCGCTTTTACTTCTGGATTTGGTTTTGCGGGATCTATGGCTGTTGCTGTTCTGGCTTCTGCTCTGTTTGTTTAGATGAATTTTTACATTTGATTAATGGGTTTTTTTGTTGTTGTTATTTGTTTAATCATATTTATATGATTTTGTTGTTTTATTATATCTTAATGAGATTATTATTATAATTA

Coding sequence (CDS)

ATGGCTTCCAAGAATTTAATTGCTCTTCTCTTCGTTCTGGCTTTGGTAGCTTCCTCAGCTACGGCGGCGCACCACCATTCGCACCCGAATTCGCCGGCGCCAGCCCCTTCTCCGGCGGCCACCGTGGAGGCTCCATTTGTTGCTCCGGCTCCGGCGCCGAGCGCCGCCGCTTTTACTTCTGGATTTGGTTTTGCGGGATCTATGGCTGTTGCTGTTCTGGCTTCTGCTCTGTTTGTTTAG

Protein sequence

MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPAATVEAPFVAPAPAPSAAAFTSGFGFAGSMAVAVLASALFV
Homology
[Close]
BLAST of Sed0022365.1 vs. NCBI nr
Match: KGN43805.2 (hypothetical protein Csa_017194, partial [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 1   MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPAATVEAPFVAPA-----PAPSA 60
           MAS++ + LL VLALVASSATA HHHSHP SPAPAPSP A VEAP V P+     P  + 
Sbjct: 90  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSP-AVVEAPSVPPSSISGTPVEAP 149

Query: 61  AAFTSGFGF-AGSMAVAV---LASALFV 80
           A   +G G  +GSMAV+V    A+ALFV
Sbjct: 150 APAANGAGLVSGSMAVSVGIFFAAALFV 176

[Close]
BLAST of Sed0022365.1 vs. NCBI nr
Match: XP_023554722.1 (uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ + +L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEAPLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]
BLAST of Sed0022365.1 vs. NCBI nr
Match: KAG6571852.1 (hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ + +L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]
BLAST of Sed0022365.1 vs. NCBI nr
Match: XP_022952911.1 (STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ +  L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]
BLAST of Sed0022365.1 vs. ExPASy TrEMBL
Match: A0A0A0K427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-08
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPAATVEAPFVAPA-----PAPSA 60
          MAS++ + LL VLALVASSATA HHHSHP SPAPAPSP A VEAP V P+     P  + 
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSP-AVVEAPSVPPSSISGTPVEAP 60

Query: 61 AAFTSGFGF-AGSMAVAV---LASALFV 80
          A   +G G  +GSMAV+V    A+ALFV
Sbjct: 61 APAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]
BLAST of Sed0022365.1 vs. ExPASy TrEMBL
Match: A0A6J1GLJ6 (STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschata OX=3662 GN=LOC111455452 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 1  MASKNLIALLFVLALVASSATAAHHHSHPNSPAPAPSPA------ATVEAPFVAPAPAPS 60
          MAS++ +  L ++ALVAS A A HHH+H  SPAPAPSP       A   +P  APAPA S
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAPAPSPVSAPAPAES 60

Query: 61 AAAFTSGFGFAGSMAVAV--LASALF 79
           A    G GFAGSMAV V   A+ALF
Sbjct: 61 GAG-VIGTGFAGSMAVGVGIFAAALF 85

The following BLAST results are available for this feature:
BLAST of Sed0022365.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43805.21.4e-0759.09hypothetical protein Csa_017194, partial [Cucumis sativus][more]
XP_023554722.12.2e-0553.49uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo][more]
KAG6571852.12.2e-0553.49hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022952911.13.8e-0553.49STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata][more]
BLAST of Sed0022365.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0022365.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4276.8e-0859.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1[more]
A0A6J1GLJ61.9e-0553.49STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschat... [more]
BLAST of Sed0022365.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0022365Sed0022365gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0022365.1-five_prime_utrSed0022365.1-five_prime_utr-LG06:8101262..8101317five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0022365.1-exonSed0022365.1-exon-LG06:8101262..8101667exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0022365.1-cdsSed0022365.1-cds-LG06:8101318..8101557CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0022365.1-three_prime_utrSed0022365.1-three_prime_utr-LG06:8101558..8101667three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0022365.1Sed0022365.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005737 cytoplasm
molecular_function GO:0061630 ubiquitin protein ligase activity