Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATTTGAATAGAGTCTGGAAAATTATAAGAGGTTGAAGTTGAAGCAGCAATTCAAGAGAATGGGCGCAGAAGAAGAAGAGAAGGTGGGATCTGAGAATGGAAGGGCGAATCTGATGACAGAGGCTGAGTTCATGTCCTGGAAGCGACGAAAGGTCTACTTTCCCTTTCCCTTCGCTTAGGGTTTGTTTCCAATTTCAGTCAATTTTGAGAATTAGGGTTGCGTTGTTGATTGCCAAAAACACATGAAAATCGAAGTTATCTGAATCTGAAATCTCCAGGAACTGTTGGAATTATCTCCTCTGTTGTGCAAATAAGAATTGACTTATGAATTAGATCCCCTGTTGATCTCTTATGCACATCACATGCCAATTAAGATCTCTAATGAAATCATACCTTAGAATTCGAGGACTCAATTGTACAACATATAGAAGTAGAATCGATCTTGTTCAAGCAAGATCGTAAAATACCTACAATTTGTGAATGCTATCTTAAAATTTGGAGGCTATATTATCGTTCCACATCATATGTTTCAGCTATTGATTCACAGTGGCACGAAACATTGTTTCACTCTTGGACGTTCAAGTTAACTGGCCACTGCCATAACAAAGAACCTGAATCATTCCCCTAGTCAATTATGAAGCCATTAGTGCTTCATTGAAGTTTAATAAGTTGGTGATGTTTTACATTTATCTCCAACTGCCTTCTCTTACTCTGCAGGATGCTGAGGCATCTGCTAAAAGAGACGAAACAGCAAGGAAGCGTGCAGAGGATATAGCCTCAGGAGCGGTGCAAATGAACGGCCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAACACCCAGTATTGAGGTTGGTTTTTATTGCAAATATTGTAGTACCACTTTTTGTGGTTTCTTGAAAAATTGGTTTTTTCCCTTTAAAATGCTACCTTCTATGGTATTCAACATTCATCCTTCATAAGAAATAGTAGTTCTCCCACCCAAAAATTTCCCTCTCTTGGGCTGTAGTAGCCAAATACGAATCTGTTTAGGTTTCATCGAAAGATATGTTCAAAACTTATGAGTTGGACCATGTACTATCTACTGTTTTAGTTATCGGTTCGTTCTTAAAGCCCGATACTTGAAGACCGTTTTCGATGGTTGATTTTCTATAACCTGGCTTGTGGGATTGAAAATTAGCACAAAAGTTACCTGAAAT
mRNA sequence
TTTTATTTGAATAGAGTCTGGAAAATTATAAGAGGTTGAAGTTGAAGCAGCAATTCAAGAGAATGGGCGCAGAAGAAGAAGAGAAGGTGGGATCTGAGAATGGAAGGGCGAATCTGATGACAGAGGCTGAGTTCATGTCCTGGAAGCGACGAAAGGATGCTGAGGCATCTGCTAAAAGAGACGAAACAGCAAGGAAGCGTGCAGAGGATATAGCCTCAGGAGCGGTGCAAATGAACGGCCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAACACCCAGTATTGAGGTTGGTTTTTATTGCAAATATTGTAGTACCACTTTTTGTGGTTTCTTGAAAAATTGGTTTTTTCCCTTTAAAATGCTACCTTCTATGGTATTCAACATTCATCCTTCATAAGAAATAGTAGTTCTCCCACCCAAAAATTTCCCTCTCTTGGGCTGTAGTAGCCAAATACGAATCTGTTTAGGTTTCATCGAAAGATATGTTCAAAACTTATGAGTTGGACCATGTACTATCTACTGTTTTAGTTATCGGTTCGTTCTTAAAGCCCGATACTTGAAGACCGTTTTCGATGGTTGATTTTCTATAACCTGGCTTGTGGGATTGAAAATTAGCACAAAAGTTACCTGAAAT
Coding sequence (CDS)
ATGGGCGCAGAAGAAGAAGAGAAGGTGGGATCTGAGAATGGAAGGGCGAATCTGATGACAGAGGCTGAGTTCATGTCCTGGAAGCGACGAAAGGATGCTGAGGCATCTGCTAAAAGAGACGAAACAGCAAGGAAGCGTGCAGAGGATATAGCCTCAGGAGCGGTGCAAATGAACGGCCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAACACCCAGTATTGA
Protein sequence
MGAEEEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNTQY
Homology
BLAST of Sed0022194 vs. NCBI nr
Match:
XP_038906768.1 (zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida])
HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 0
Query: 2 GAEEEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGRE 61
GA E+EK S N R +TEA+F+SWKR+KDAEASAKRDETARKRAEDIASGAVQMNGRE
Sbjct: 5 GATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQMNGRE 64
Query: 62 LFLHQPWVFDNTQY 76
LFLHQPWVFDNTQY
Sbjct: 65 LFLHQPWVFDNTQY 78
BLAST of Sed0022194 vs. NCBI nr
Match:
XP_022990599.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023545022.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6602051.1 hypothetical protein SDJN03_07284, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032745.1 hypothetical protein SDJN02_06795 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0
Query: 1 MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
MGAE E+EK+ S + AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1 MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
Query: 61 MNGRELFLHQPWVFDNTQY 76
MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79
BLAST of Sed0022194 vs. NCBI nr
Match:
XP_022141384.1 (zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia])
HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0
Query: 1 MGAE------EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGA 60
MGAE E+EK+ S N R N +TEA+F+SWKR+KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1 MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
Query: 61 VQMNGRELFLHQPWVFDNTQY 76
VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81
BLAST of Sed0022194 vs. NCBI nr
Match:
XP_022963450.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata])
HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0
Query: 1 MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
MGAE E EK+ S + AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1 MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
Query: 61 MNGRELFLHQPWVFDNTQY 76
MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79
BLAST of Sed0022194 vs. NCBI nr
Match:
XP_022939418.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_023549915.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6579014.1 hypothetical protein SDJN03_23462, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 0
Query: 1 MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
MGAE E+EK+ S N R +TE +F+SWKR+KDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1 MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
Query: 61 MNGRELFLHQPWVFDNTQY 76
MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79
BLAST of Sed0022194 vs. ExPASy TrEMBL
Match:
A0A6J1JSG7 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487435 PE=4 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0
Query: 1 MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
MGAE E+EK+ S + AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1 MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
Query: 61 MNGRELFLHQPWVFDNTQY 76
MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79
BLAST of Sed0022194 vs. ExPASy TrEMBL
Match:
A0A6J1CIH3 (zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=3673 GN=LOC111011797 PE=4 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0
Query: 1 MGAE------EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGA 60
MGAE E+EK+ S N R N +TEA+F+SWKR+KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1 MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
Query: 61 VQMNGRELFLHQPWVFDNTQY 76
VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81
BLAST of Sed0022194 vs. ExPASy TrEMBL
Match:
A0A6J1HI11 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463754 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 4.9e-24
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0
Query: 1 MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
MGAE E EK+ S + AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1 MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60
Query: 61 MNGRELFLHQPWVFDNTQY 76
MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79
BLAST of Sed0022194 vs. ExPASy TrEMBL
Match:
A0A6J1FLL2 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445336 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 7.1e-23
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 0
Query: 1 MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
MGAE E+EK+ S N R +TE +F+SWKR+KDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1 MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60
Query: 61 MNGRELFLHQPWVFDNTQY 76
MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79
BLAST of Sed0022194 vs. ExPASy TrEMBL
Match:
A0A6J1JUQ1 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111489071 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 0
Query: 3 AEEEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGREL 62
A E+EK+ S N R +TE +F+SWKR+KDAEASAKRDETARKRA+DIASGAVQMNGREL
Sbjct: 7 AMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGREL 66
Query: 63 FLHQPWVFDNTQY 76
FLHQPWVFDN+QY
Sbjct: 67 FLHQPWVFDNSQY 79
BLAST of Sed0022194 vs. TAIR 10
Match:
AT1G22140.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )
HSP 1 Score: 80.1 bits (196), Expect = 8.3e-16
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 0
Query: 9 VGSENGRANLMTEA-----EFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGRELF 68
+G+ NG T+ +F++WKR+KDAE AK+ E ARKR EDIASG V MNGRELF
Sbjct: 1 MGAGNGETPKPTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELF 60
Query: 69 LHQPWVFDNTQY 76
LH+PWVFD+T +
Sbjct: 61 LHEPWVFDDTHH 72
BLAST of Sed0022194 vs. TAIR 10
Match:
AT1G22140.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query: 9 VGSENGRANLMTEA-----EFMSWKRRKDAEASAKRDETARKRAEDIASG 54
+G+ NG T+ +F++WKR+KDAE AK+ E ARKR EDIASG
Sbjct: 1 MGAGNGETPKPTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASG 50
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038906768.1 | 6.0e-24 | 82.43 | zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida] | [more] |
| XP_022990599.1 | 6.0e-24 | 79.75 | zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023... | [more] |
| XP_022141384.1 | 6.0e-24 | 77.78 | zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia] | [more] |
| XP_022963450.1 | 1.0e-23 | 79.75 | zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] | [more] |
| XP_022939418.1 | 1.5e-22 | 75.95 | zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_0... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1JSG7 | 2.9e-24 | 79.75 | zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366... | [more] |
| A0A6J1CIH3 | 2.9e-24 | 77.78 | zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=... | [more] |
| A0A6J1HI11 | 4.9e-24 | 79.75 | zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3... | [more] |
| A0A6J1FLL2 | 7.1e-23 | 75.95 | zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3... | [more] |
| A0A6J1JUQ1 | 1.6e-22 | 78.08 | zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G22140.1 | 8.3e-16 | 56.94 | unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bac... | [more] |
| AT1G22140.2 | 1.5e-04 | 50.00 | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... | [more] |
