Sed0022194.1 (mRNA) Chayote v1

Overview


Name	Sed0022194.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 15 homolog
Location	LG03: 5219518 .. 5220721 (+)
Sequence length	639
RNA-Seq Expression	Sed0022194.1
Synteny	Sed0022194.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATTTGAATAGAGTCTGGAAAATTATAAGAGGTTGAAGTTGAAGCAGCAATTCAAGAGAATGGGCGCAGAAGAAGAAGAGAAGGTGGGATCTGAGAATGGAAGGGCGAATCTGATGACAGAGGCTGAGTTCATGTCCTGGAAGCGACGAAAGGTCTACTTTCCCTTTCCCTTCGCTTAGGGTTTGTTTCCAATTTCAGTCAATTTTGAGAATTAGGGTTGCGTTGTTGATTGCCAAAAACACATGAAAATCGAAGTTATCTGAATCTGAAATCTCCAGGAACTGTTGGAATTATCTCCTCTGTTGTGCAAATAAGAATTGACTTATGAATTAGATCCCCTGTTGATCTCTTATGCACATCACATGCCAATTAAGATCTCTAATGAAATCATACCTTAGAATTCGAGGACTCAATTGTACAACATATAGAAGTAGAATCGATCTTGTTCAAGCAAGATCGTAAAATACCTACAATTTGTGAATGCTATCTTAAAATTTGGAGGCTATATTATCGTTCCACATCATATGTTTCAGCTATTGATTCACAGTGGCACGAAACATTGTTTCACTCTTGGACGTTCAAGTTAACTGGCCACTGCCATAACAAAGAACCTGAATCATTCCCCTAGTCAATTATGAAGCCATTAGTGCTTCATTGAAGTTTAATAAGTTGGTGATGTTTTACATTTATCTCCAACTGCCTTCTCTTACTCTGCAGGATGCTGAGGCATCTGCTAAAAGAGACGAAACAGCAAGGAAGCGTGCAGAGGATATAGCCTCAGGAGCGGTGCAAATGAACGGCCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAACACCCAGTATTGAGGTTGGTTTTTATTGCAAATATTGTAGTACCACTTTTTGTGGTTTCTTGAAAAATTGGTTTTTTCCCTTTAAAATGCTACCTTCTATGGTATTCAACATTCATCCTTCATAAGAAATAGTAGTTCTCCCACCCAAAAATTTCCCTCTCTTGGGCTGTAGTAGCCAAATACGAATCTGTTTAGGTTTCATCGAAAGATATGTTCAAAACTTATGAGTTGGACCATGTACTATCTACTGTTTTAGTTATCGGTTCGTTCTTAAAGCCCGATACTTGAAGACCGTTTTCGATGGTTGATTTTCTATAACCTGGCTTGTGGGATTGAAAATTAGCACAAAAGTTACCTGAAAT

mRNA sequence

TTTTATTTGAATAGAGTCTGGAAAATTATAAGAGGTTGAAGTTGAAGCAGCAATTCAAGAGAATGGGCGCAGAAGAAGAAGAGAAGGTGGGATCTGAGAATGGAAGGGCGAATCTGATGACAGAGGCTGAGTTCATGTCCTGGAAGCGACGAAAGGATGCTGAGGCATCTGCTAAAAGAGACGAAACAGCAAGGAAGCGTGCAGAGGATATAGCCTCAGGAGCGGTGCAAATGAACGGCCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAACACCCAGTATTGAGGTTGGTTTTTATTGCAAATATTGTAGTACCACTTTTTGTGGTTTCTTGAAAAATTGGTTTTTTCCCTTTAAAATGCTACCTTCTATGGTATTCAACATTCATCCTTCATAAGAAATAGTAGTTCTCCCACCCAAAAATTTCCCTCTCTTGGGCTGTAGTAGCCAAATACGAATCTGTTTAGGTTTCATCGAAAGATATGTTCAAAACTTATGAGTTGGACCATGTACTATCTACTGTTTTAGTTATCGGTTCGTTCTTAAAGCCCGATACTTGAAGACCGTTTTCGATGGTTGATTTTCTATAACCTGGCTTGTGGGATTGAAAATTAGCACAAAAGTTACCTGAAAT

Coding sequence (CDS)

ATGGGCGCAGAAGAAGAAGAGAAGGTGGGATCTGAGAATGGAAGGGCGAATCTGATGACAGAGGCTGAGTTCATGTCCTGGAAGCGACGAAAGGATGCTGAGGCATCTGCTAAAAGAGACGAAACAGCAAGGAAGCGTGCAGAGGATATAGCCTCAGGAGCGGTGCAAATGAACGGCCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAACACCCAGTATTGA

Protein sequence

MGAEEEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNTQY

Homology

[Close]

BLAST of Sed0022194.1 vs. NCBI nr
Match: XP_038906768.1 (zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida])

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 2  GAEEEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGRE 61
          GA E+EK  S N R   +TEA+F+SWKR+KDAEASAKRDETARKRAEDIASGAVQMNGRE
Sbjct: 5  GATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQMNGRE 64

Query: 62 LFLHQPWVFDNTQY 76
          LFLHQPWVFDNTQY
Sbjct: 65 LFLHQPWVFDNTQY 78

[Close]

BLAST of Sed0022194.1 vs. NCBI nr
Match: XP_022990599.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023545022.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6602051.1 hypothetical protein SDJN03_07284, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032745.1 hypothetical protein SDJN02_06795 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAE    E+EK+ S +  AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 76
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of Sed0022194.1 vs. NCBI nr
Match: XP_022141384.1 (zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 6.0e-24
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MGAE------EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGA 60
          MGAE      E+EK+ S N R N +TEA+F+SWKR+KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 76
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

[Close]

BLAST of Sed0022194.1 vs. NCBI nr
Match: XP_022963450.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAE    E EK+ S +  AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 76
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of Sed0022194.1 vs. NCBI nr
Match: XP_022939418.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_023549915.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6579014.1 hypothetical protein SDJN03_23462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAE    E+EK+ S N R   +TE +F+SWKR+KDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 76
          MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Sed0022194.1 vs. ExPASy TrEMBL
Match: A0A6J1JSG7 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487435 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAE    E+EK+ S +  AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 76
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of Sed0022194.1 vs. ExPASy TrEMBL
Match: A0A6J1CIH3 (zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=3673 GN=LOC111011797 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MGAE------EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGA 60
          MGAE      E+EK+ S N R N +TEA+F+SWKR+KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 76
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

[Close]

BLAST of Sed0022194.1 vs. ExPASy TrEMBL
Match: A0A6J1HI11 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463754 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.9e-24
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAE    E EK+ S +  AN +TEA+F+SWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 76
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of Sed0022194.1 vs. ExPASy TrEMBL
Match: A0A6J1FLL2 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445336 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.1e-23
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MGAE----EEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQ 60
          MGAE    E+EK+ S N R   +TE +F+SWKR+KDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 76
          MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of Sed0022194.1 vs. ExPASy TrEMBL
Match: A0A6J1JUQ1 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111489071 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 3  AEEEEKVGSENGRANLMTEAEFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGREL 62
          A E+EK+ S N R   +TE +F+SWKR+KDAEASAKRDETARKRA+DIASGAVQMNGREL
Sbjct: 7  AMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGREL 66

Query: 63 FLHQPWVFDNTQY 76
          FLHQPWVFDN+QY
Sbjct: 67 FLHQPWVFDNSQY 79

[Close]

BLAST of Sed0022194.1 vs. TAIR 10
Match: AT1G22140.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 8.3e-16
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 9  VGSENGRANLMTEA-----EFMSWKRRKDAEASAKRDETARKRAEDIASGAVQMNGRELF 68
          +G+ NG     T+      +F++WKR+KDAE  AK+ E ARKR EDIASG V MNGRELF
Sbjct: 1  MGAGNGETPKPTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELF 60

Query: 69 LHQPWVFDNTQY 76
          LH+PWVFD+T +
Sbjct: 61 LHEPWVFDDTHH 72

[Close]

BLAST of Sed0022194.1 vs. TAIR 10
Match: AT1G22140.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 9  VGSENGRANLMTEA-----EFMSWKRRKDAEASAKRDETARKRAEDIASG 54
          +G+ NG     T+      +F++WKR+KDAE  AK+ E ARKR EDIASG
Sbjct: 1  MGAGNGETPKPTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASG 50

The following BLAST results are available for this feature:

BLAST of Sed0022194.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906768.1	6.0e-24	82.43	zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida]	[more]
XP_022990599.1	6.0e-24	79.75	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023...	[more]
XP_022141384.1	6.0e-24	77.78	zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia]	[more]
XP_022963450.1	1.0e-23	79.75	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata]	[more]
XP_022939418.1	1.5e-22	75.95	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_0...	[more]

BLAST of Sed0022194.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022194.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSG7	2.9e-24	79.75	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366...	[more]
A0A6J1CIH3	2.9e-24	77.78	zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=...	[more]
A0A6J1HI11	4.9e-24	79.75	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3...	[more]
A0A6J1FLL2	7.1e-23	75.95	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3...	[more]
A0A6J1JUQ1	1.6e-22	78.08	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366...	[more]

BLAST of Sed0022194.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22140.1	8.3e-16	56.94	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bac...	[more]
AT1G22140.2	1.5e-04	50.00	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR12681	ZINC FINGER-CONTAINING PROTEIN P48ZNF	coord: 1..75
None	No IPR available	PANTHER	PTHR12681:SF10	OS03G0385301 PROTEIN	coord: 1..75

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022194	Sed0022194	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022194.1-five_prime_utr	Sed0022194.1-five_prime_utr-LG03:5219518..5219579	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022194.1-exon	Sed0022194.1-exon-LG03:5219518..5219672	exon
Sed0022194.1-exon	Sed0022194.1-exon-LG03:5220238..5220721	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022194.1-cds	Sed0022194.1-cds-LG03:5219580..5219672	CDS
Sed0022194.1-cds	Sed0022194.1-cds-LG03:5220238..5220372	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022194.1-three_prime_utr	Sed0022194.1-three_prime_utr-LG03:5220373..5220721	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022194.1	Sed0022194.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0005829	cytosol