Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACAACAATATGGTTCCTTTCCAAGTGTCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGCATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGAAATTGTTGATAGAGGCTATGACGAGCCCGAAAATGACGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGTTAAGTACTAGAAAGAAAGATCAAAAGGCACTCACCATTATTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCGACGGAAGCATGA
mRNA sequence
ATGGCAAACAACAATATGGTTCCTTTCCAAGTGTCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGCATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGAAATTGTTGATAGAGGCTATGACGAGCCCGAAAATGACGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGTTAAGTACTAGAAAGAAAGATCAAAAGGCACTCACCATTATTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCGACGGAAGCATGA
Coding sequence (CDS)
ATGGCAAACAACAATATGGTTCCTTTCCAAGTGTCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGCATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGAAATTGTTGATAGAGGCTATGACGAGCCCGAAAATGACGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGTTAAGTACTAGAAAGAAAGATCAAAAGGCACTCACCATTATTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCGACGGAAGCATGA
Protein sequence
MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLLSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
Homology
BLAST of Sed0022174 vs. NCBI nr
Match:
TYK13816.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. NCBI nr
Match:
KAA0026102.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. NCBI nr
Match:
KAA0062322.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. NCBI nr
Match:
KAA0051409.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. NCBI nr
Match:
XP_008456214.1 (PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo])
HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VP QV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA+++ AQRE L
Sbjct: 2 MANNNLVPLQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDASLNQAQREAL 61
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 62 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 96
BLAST of Sed0022174 vs. ExPASy TrEMBL
Match:
A0A5D3CTU3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00790 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. ExPASy TrEMBL
Match:
A0A5A7V277 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00740 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. ExPASy TrEMBL
Match:
A0A5A7UDA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001520 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. ExPASy TrEMBL
Match:
A0A5A7SLT1 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00380 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA ++ AQRE L
Sbjct: 1 MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95
BLAST of Sed0022174 vs. ExPASy TrEMBL
Match:
A0A1S3C2T7 (uncharacterized protein LOC103496217 OS=Cucumis melo OX=3656 GN=LOC103496217 PE=4 SV=1)
HSP 1 Score: 159.1 bits (401), Expect = 9.3e-36
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MANNN+VP QV RLTKENYSSWCIRMKALLGSQDVW+IV GY+EPE+DA+++ AQRE L
Sbjct: 2 MANNNLVPLQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDASLNQAQREAL 61
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 62 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 96
BLAST of Sed0022174 vs. TAIR 10
Match:
AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 0
Query: 1 MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
MA+NN VPFQV LTK NY +W +RMKA+LG+ DVWEIV++G+ EPEN+ ++S Q++ L
Sbjct: 1 MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60
Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATE 95
+RK+D+KAL +I+Q +D+ FEK+ AT+A +
Sbjct: 61 RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKD 93
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK13816.1 | 5.1e-36 | 81.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0026102.1 | 5.1e-36 | 81.05 | putative copia-type polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0062322.1 | 5.1e-36 | 81.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0051409.1 | 5.1e-36 | 81.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| XP_008456214.1 | 1.9e-35 | 80.00 | PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CTU3 | 2.4e-36 | 81.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7V277 | 2.4e-36 | 81.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7UDA0 | 2.4e-36 | 81.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7SLT1 | 2.4e-36 | 81.05 | Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A1S3C2T7 | 9.3e-36 | 80.00 | uncharacterized protein LOC103496217 OS=Cucumis melo OX=3656 GN=LOC103496217 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G48720.1 | 1.2e-24 | 53.19 | unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B... | [more] |
