Sed0022174 (gene) Chayote v1

Overview


Name	Sed0022174
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	LG02: 30721470 .. 30721757 (+)
RNA-Seq Expression	Sed0022174
Synteny	Sed0022174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACAACAATATGGTTCCTTTCCAAGTGTCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGCATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGAAATTGTTGATAGAGGCTATGACGAGCCCGAAAATGACGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGTTAAGTACTAGAAAGAAAGATCAAAAGGCACTCACCATTATTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCGACGGAAGCATGA

mRNA sequence

ATGGCAAACAACAATATGGTTCCTTTCCAAGTGTCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGCATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGAAATTGTTGATAGAGGCTATGACGAGCCCGAAAATGACGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGTTAAGTACTAGAAAGAAAGATCAAAAGGCACTCACCATTATTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCGACGGAAGCATGA

Coding sequence (CDS)

ATGGCAAACAACAATATGGTTCCTTTCCAAGTGTCTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGCATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGAAATTGTTGATAGAGGCTATGACGAGCCCGAAAATGACGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGTTAAGTACTAGAAAGAAAGATCAAAAGGCACTCACCATTATTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCGACGGAAGCATGA

Protein sequence

MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLLSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA

Homology

[Close]

BLAST of Sed0022174 vs. NCBI nr
Match: TYK13816.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. NCBI nr
Match: KAA0026102.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. NCBI nr
Match: KAA0062322.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. NCBI nr
Match: KAA0051409.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. NCBI nr
Match: XP_008456214.1 (PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VP QV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA+++ AQRE L
Sbjct: 2  MANNNLVPLQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDASLNQAQREAL 61

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 62 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 96

[Close]

BLAST of Sed0022174 vs. ExPASy TrEMBL
Match: A0A5D3CTU3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00790 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. ExPASy TrEMBL
Match: A0A5A7V277 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00740 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. ExPASy TrEMBL
Match: A0A5A7UDA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001520 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. ExPASy TrEMBL
Match: A0A5A7SLT1 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00380 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE L
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 95

[Close]

BLAST of Sed0022174 vs. ExPASy TrEMBL
Match: A0A1S3C2T7 (uncharacterized protein LOC103496217 OS=Cucumis melo OX=3656 GN=LOC103496217 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 9.3e-36
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MANNN+VP QV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+DA+++ AQRE L
Sbjct: 2  MANNNLVPLQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDASLNQAQREAL 61

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA 96
           +TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Sbjct: 62 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQA 96

[Close]

BLAST of Sed0022174 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MANNNMVPFQVSRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVL 60
          MA+NN VPFQV  LTK NY +W +RMKA+LG+ DVWEIV++G+ EPEN+ ++S  Q++ L
Sbjct: 1  MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61 LSTRKKDQKALTIIHQAIDDTNFEKIFGATTATE 95
            +RK+D+KAL +I+Q +D+  FEK+  AT+A +
Sbjct: 61 RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKD 93

The following BLAST results are available for this feature:

BLAST of Sed0022174 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13816.1	5.1e-36	81.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0026102.1	5.1e-36	81.05	putative copia-type polyprotein [Cucumis melo var. makuwa]	[more]
KAA0062322.1	5.1e-36	81.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0051409.1	5.1e-36	81.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_008456214.1	1.9e-35	80.00	PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]	[more]

BLAST of Sed0022174 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTU3	2.4e-36	81.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V277	2.4e-36	81.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UDA0	2.4e-36	81.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SLT1	2.4e-36	81.05	Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3C2T7	9.3e-36	80.00	uncharacterized protein LOC103496217 OS=Cucumis melo OX=3656 GN=LOC103496217 PE=...	[more]

BLAST of Sed0022174 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	1.2e-24	53.19	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..39 e-value: 3.8E-10 score: 39.3
None	No IPR available	PANTHER	PTHR37610:SF17	ZINC FINGER, CCHC-TYPE, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 13..90
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 13..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022174.1	Sed0022174.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding