Sed0018564 (gene) Chayote v1

Overview


Name	Sed0018564
Type	gene
Organism	Sechium edule (Chayote v1)
Description	T3P18.3
Location	LG07: 4951550 .. 4952032 (+)
RNA-Seq Expression	Sed0018564
Synteny	Sed0018564

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCGCTCCTACCGTCACCACCCCTGCTGGCAATCCGTCTTCGACCATACCTGTTCTGGCGATCGGCAACACGGAAACCTTCGTCAGCCCACCCTTAAATCAGCTTCTTACTCAAATCACGACCATAAAAATGGATCAGGAAAATTTTCTCCTCTGGCAAAATCTTGCCCTACCCATCCTTCGGAGCTATCGGTTGTTTGACTACCTTACCGGAGACAAACCCTGCCCGACCAAATTTCTTCCCTCATCATTCTCTCTGGAAAATTCGAGCTCTATTCCAGCCTCGCCTCCACTGGTTGTTAACCCAGAATACAAATTTTGGGTGGTTATGGATCAATTACTGCTTGGATGGTTGTATAACTCCATGATAGTTGAAGTGGCGACTCAGGTGATGGGATATCATACCTCTGCTGATCTTTGGCAAGCTGTTCAACGGTTATTTGGGGTTCAATCAAAAGCTGAAACAGCTTATTTGTAG

mRNA sequence

ATGTCTTCCGCTCCTACCGTCACCACCCCTGCTGGCAATCCGTCTTCGACCATACCTGTTCTGGCGATCGGCAACACGGAAACCTTCGTCAGCCCACCCTTAAATCAGCTTCTTACTCAAATCACGACCATAAAAATGGATCAGGAAAATTTTCTCCTCTGGCAAAATCTTGCCCTACCCATCCTTCGGAGCTATCGGTTGTTTGACTACCTTACCGGAGACAAACCCTGCCCGACCAAATTTCTTCCCTCATCATTCTCTCTGGAAAATTCGAGCTCTATTCCAGCCTCGCCTCCACTGGTTGTTAACCCAGAATACAAATTTTGGGTGGTTATGGATCAATTACTGCTTGGATGGTTGTATAACTCCATGATAGTTGAAGTGGCGACTCAGGTGATGGGATATCATACCTCTGCTGATCTTTGGCAAGCTGTTCAACGGTTATTTGGGGTTCAATCAAAAGCTGAAACAGCTTATTTGTAG

Coding sequence (CDS)

ATGTCTTCCGCTCCTACCGTCACCACCCCTGCTGGCAATCCGTCTTCGACCATACCTGTTCTGGCGATCGGCAACACGGAAACCTTCGTCAGCCCACCCTTAAATCAGCTTCTTACTCAAATCACGACCATAAAAATGGATCAGGAAAATTTTCTCCTCTGGCAAAATCTTGCCCTACCCATCCTTCGGAGCTATCGGTTGTTTGACTACCTTACCGGAGACAAACCCTGCCCGACCAAATTTCTTCCCTCATCATTCTCTCTGGAAAATTCGAGCTCTATTCCAGCCTCGCCTCCACTGGTTGTTAACCCAGAATACAAATTTTGGGTGGTTATGGATCAATTACTGCTTGGATGGTTGTATAACTCCATGATAGTTGAAGTGGCGACTCAGGTGATGGGATATCATACCTCTGCTGATCTTTGGCAAGCTGTTCAACGGTTATTTGGGGTTCAATCAAAAGCTGAAACAGCTTATTTGTAG

Protein sequence

MSSAPTVTTPAGNPSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENSSSIPASPPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL

Homology

[Close]

BLAST of Sed0018564 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 3.9e-41
Identity = 93/150 (62.00%), Postives = 114/150 (76.00%), Query Frame = 0


Query: 14  PSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTG 73
           P+  +   A+ +   F SPPLNQLL QIT+IKMD+ NFLLWQNLALPILRSY+LFDYLTG
Sbjct: 7   PTPIVTPPAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTG 66

Query: 74  DKPC-PTKFLPSS--FSLENSSSIPASPPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVAT 133
           DKPC PT  +P+    ++E S+S  +SP L  NP Y+ W+V+D+LLLGWLYNSM  +VA 
Sbjct: 67  DKPCPPTHLVPTDTPTNIEGSTSSQSSPTL--NPTYEAWIVVDKLLLGWLYNSMAADVAM 126

Query: 134 QVMGYHTSADLWQAVQRLFGVQSKAETAYL 161
           QVMG+ TS +LW AVQ LFGVQS+AE  YL
Sbjct: 127 QVMGFSTSRELWTAVQELFGVQSRAEVDYL 154

[Close]

BLAST of Sed0018564 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-29
Identity = 68/136 (50.00%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 25  NTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPS 84
           +T  F +PPLNQ+L Q+ ++K+D+ N+LLWQ LALPIL+SY+L  +LT +  CP KF+ +
Sbjct: 11  STTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPPKFIIN 70

Query: 85  SFSLENSSSIPASPPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTSADLWQA 144
                +S S        VNP++  WV  D LLLGW+YNSM  EVA Q+MG++T+ DLW+A
Sbjct: 71  PTCGASSRSTTTK---TVNPKFDQWVTFDLLLLGWMYNSMTPEVALQLMGFNTAKDLWEA 130

Query: 145 VQRLFGVQSKAETAYL 161
           +Q LFGVQ +AE  +L
Sbjct: 131 IQDLFGVQLRAEEDFL 143

[Close]

BLAST of Sed0018564 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 29  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSL 88
           F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S 
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSS 77

Query: 89  ENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTS 148
             +       ++I AS    P +VNP ++ WV  D LLLGWLYNSM  +VA Q+MG+   
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 149 ADLWQAVQRLFGVQSKAETAYL 161
            DLW A Q  FGVQS+AE  +L
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFL 159

[Close]

BLAST of Sed0018564 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 29  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSL 88
           F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S 
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSS 77

Query: 89  ENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTS 148
             +       ++I AS    P +VNP ++ WV  D LLLGWLYNSM  +VA Q+MG+   
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 149 ADLWQAVQRLFGVQSKAETAYL 161
            DLW A Q  FGVQS+AE  +L
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFL 159

[Close]

BLAST of Sed0018564 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 29  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSL 88
           F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S 
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSS 77

Query: 89  ENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTS 148
             +       ++I AS    P +VNP ++ WV  D LLLGWLYNSM  +VA Q+MG+   
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 149 ADLWQAVQRLFGVQSKAETAYL 161
            DLW A Q  FGVQS+AE  +L
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFL 159

[Close]

BLAST of Sed0018564 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 93/150 (62.00%), Postives = 114/150 (76.00%), Query Frame = 0


Query: 14  PSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTG 73
           P+  +   A+ +   F SPPLNQLL QIT+IKMD+ NFLLWQNLALPILRSY+LFDYLTG
Sbjct: 7   PTPIVTPPAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTG 66

Query: 74  DKPC-PTKFLPSS--FSLENSSSIPASPPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVAT 133
           DKPC PT  +P+    ++E S+S  +SP L  NP Y+ W+V+D+LLLGWLYNSM  +VA 
Sbjct: 67  DKPCPPTHLVPTDTPTNIEGSTSSQSSPTL--NPTYEAWIVVDKLLLGWLYNSMAADVAM 126

Query: 134 QVMGYHTSADLWQAVQRLFGVQSKAETAYL 161
           QVMG+ TS +LW AVQ LFGVQS+AE  YL
Sbjct: 127 QVMGFSTSRELWTAVQELFGVQSRAEVDYL 154

[Close]

BLAST of Sed0018564 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 29  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSL 88
           F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S 
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSS 77

Query: 89  ENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTS 148
             +       ++I AS    P +VNP ++ WV  D LLLGWLYNSM  +VA Q+MG+   
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 149 ADLWQAVQRLFGVQSKAETAYL 161
            DLW A Q  FGVQS+AE  +L
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFL 159

[Close]

BLAST of Sed0018564 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 29  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSL 88
           F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S 
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSS 77

Query: 89  ENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTS 148
             +       ++I AS    P +VNP ++ WV  D LLLGWLYNSM  +VA Q+MG+   
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 149 ADLWQAVQRLFGVQSKAETAYL 161
            DLW A Q  FGVQS+AE  +L
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFL 159

[Close]

BLAST of Sed0018564 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 29  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSL 88
           F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S 
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSS 77

Query: 89  ENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTS 148
             +       ++I AS    P +VNP ++ WV  D LLLGWLYNSM  +VA Q+MG+   
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 149 ADLWQAVQRLFGVQSKAETAYL 161
            DLW A Q  FGVQS+AE  +L
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFL 159

[Close]

BLAST of Sed0018564 vs. ExPASy TrEMBL
Match: A0A1S4E2K3 (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-29
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 29  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSL 88
           F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S 
Sbjct: 18  FSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVLSASSS 77

Query: 89  ENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLGWLYNSMIVEVATQVMGYHTS 148
             +       ++I AS    P +VNP ++ WV  D LLLGWLYNSM  +VA Q+MG+   
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 149 ADLWQAVQRLFGVQSKAETAYL 161
            DLW A Q  FGVQS+AE  +L
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFL 159

The following BLAST results are available for this feature:

BLAST of Sed0018564 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	3.9e-41	62.00	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_031745012.1	1.6e-29	50.00	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
XP_016902203.1	7.7e-29	49.30	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
XP_016902205.1	7.7e-29	49.30	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]
XP_016902197.1	7.7e-29	49.30	PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]	[more]

BLAST of Sed0018564 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0018564 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	1.9e-41	62.00	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S4E1U9	3.7e-29	49.30	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1U6	3.7e-29	49.30	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1V2	3.7e-29	49.30	uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E2K3	3.7e-29	49.30	uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Sed0018564 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 48..157
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 48..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018564.1	Sed0018564.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0003676	nucleic acid binding