Sed0009823 (gene) Chayote v1

Overview
NameSed0009823
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRetrotrans_gag domain-containing protein
LocationLG07: 34320443 .. 34320718 (+)
RNA-Seq ExpressionSed0009823
SyntenySed0009823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACCTCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATAAAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA

mRNA sequence

ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACCTCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATAAAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA

Coding sequence (CDS)

ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACCTCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATAAAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA

Protein sequence

MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHGMTRQALS
Homology
[Close]
BLAST of Sed0009823 vs. NCBI nr
Match: KAA0062476.1 (uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK27406.1 uncharacterized protein E5676_scaffold325G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK +ADRLVEL+E+M YL EV D+I FL+ RL+EI +KA  IDAVT RLDG+P
Sbjct: 1  MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          IQEL+ RV+T+E K  R G +EHG
Sbjct: 61 IQELLTRVDTLETKVVRTGNYEHG 84

[Close]
BLAST of Sed0009823 vs. NCBI nr
Match: KAA0025805.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK09651.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS      KA+ DRLVELEE+MLYL EVPD+IRFLE RL+EI +K  MIDAV GR++G+P
Sbjct: 1  MSSANPSSKAQRDRLVELEEQMLYLVEVPDSIRFLESRLEEIAEKTNMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEH 84
          IQEL+ RV+T+E    R G  EH
Sbjct: 61 IQELLARVDTLEGTVGRTGSHEH 83

[Close]
BLAST of Sed0009823 vs. NCBI nr
Match: KAA0032146.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]
BLAST of Sed0009823 vs. NCBI nr
Match: TYK14391.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]
BLAST of Sed0009823 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK+  DRLVE+EE +L+LRE+PDN+R++E RLDEI  KA  ID V  R+DG+ 
Sbjct: 1  MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          I+ELM+RVET+EDK  R    E G
Sbjct: 61 IRELMLRVETLEDKVKRTDNLERG 84

[Close]
BLAST of Sed0009823 vs. ExPASy TrEMBL
Match: A0A5D3DUL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00940 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK +ADRLVEL+E+M YL EV D+I FL+ RL+EI +KA  IDAVT RLDG+P
Sbjct: 1  MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          IQEL+ RV+T+E K  R G +EHG
Sbjct: 61 IQELLTRVDTLETKVVRTGNYEHG 84

[Close]
BLAST of Sed0009823 vs. ExPASy TrEMBL
Match: A0A5D3CCT9 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00510 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.4e-18
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS      KA+ DRLVELEE+MLYL EVPD+IRFLE RL+EI +K  MIDAV GR++G+P
Sbjct: 1  MSSANPSSKAQRDRLVELEEQMLYLVEVPDSIRFLESRLEEIAEKTNMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTSRLGLFEH 84
          IQEL+ RV+T+E    R G  EH
Sbjct: 61 IQELLARVDTLEGTVGRTGSHEH 83

[Close]
BLAST of Sed0009823 vs. ExPASy TrEMBL
Match: A0A5D3CRH9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00330 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]
BLAST of Sed0009823 vs. ExPASy TrEMBL
Match: A0A5A7SQ54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00580 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61 IQELMMRVETIEDKTS 77
          IQEL+ RV+T+E+ T+
Sbjct: 61 IQELLARVDTLEENTN 76

[Close]
BLAST of Sed0009823 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 1  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIP 60
          MS  K +GK+  DRLVE+EE +L+LRE+PDN+R++E RLDEI  KA  ID V  R+DG+ 
Sbjct: 1  MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61 IQELMMRVETIEDKTSRLGLFEHG 85
          I+ELM+RVET+EDK  R    E G
Sbjct: 61 IRELMLRVETLEDKVKRTDNLERG 84

The following BLAST results are available for this feature:
BLAST of Sed0009823 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062476.11.3e-1761.90uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0025805.11.7e-1761.45senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK09651... [more]
KAA0032146.12.3e-1763.16ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK14391.12.3e-1763.16ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
XP_022155185.12.3e-1757.14uncharacterized protein LOC111022320 [Momordica charantia][more]
BLAST of Sed0009823 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0009823 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DUL16.4e-1861.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CCT98.4e-1861.45Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3CRH91.1e-1763.16Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SQ541.1e-1763.16Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A6J1DLQ61.1e-1757.14uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Sed0009823 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009823.1Sed0009823.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding